Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4534 ATGACGGGCTTGAATGAGGCAGAGCAGGATAAGTACAACATGATTAATTTCGAAGAGACCGAATTGCGACTCGGATTGCCCGGTGCTTCCGCCGCCGCCGCCGACACGGAGTCTTCACTCAAGAACAACTGGCCTGCTGGTGGCAAGAGAGGCTTCTCCGACACCGCTGTGGATTTGAAGCTCAATCTCTCTTCCAACACTGCACAGTCACCCCACAAGCCTGTCGACAACACAACTGCTGCCTCTCCCTCAAACGATCCCGCGAAGCCACCCGCTAAGGCTCAGGTAGTGGGTTGGCCACCGGTGCGATCATTCAGGAAGAACATCGGGACGTCGCAGAACCAGAAGAATAACGAGGAAGAAGGAGCGACGTTCGTAAAGGTGAGCATGGACGGTGCGCCTTATCTGCGCAAAGTGGACTTGAAGCAGTACAAGAGCTACCAACAGCTGTCGGGGGCGCTGGCTAAAATGTTTAGCTCCTTCACCAACGCCGATTACGGCTCCCCTCAAGCCACCAAGGACTTCCTCAACGAGAGCAAGTTGATCGATCTCTTGAACGGCTCCGACTACGTCCCCACTTACGAAGACAAGGAGGGAGATTGGATGCTTGTCGGCGACGTCCCCTGGGAAATGTTCGTGGAGTCCTGCAAGCGCCTCCGCATCATGAAAGGATCCGACGCAATTGGCCTGGCGCCGAGGGCAGTGGAAAAATGCAAGAGCAGAAGCTGA 729 0.5542 MTGLNEAEQDKYNMINFEETELRLGLPGASAAAADTESSLKNNWPAGGKRGFSDTAVDLKLNLSSNTAQSPHKPVDNTTAASPSNDPAKPPAKAQVVGWPPVRSFRKNIGTSQNQKNNEEEGATFVKVSMDGAPYLRKVDLKQYKSYQQLSGALAKMFSSFTNADYGSPQATKDFLNESKLIDLLNGSDYVPTYEDKEGDWMLVGDVPWEMFVESCKRLRIMKGSDAIGLAPRAVEKCKSRS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4534 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 229 IPR003311 GO:0005634|GO:0006355
Prci1g4534 242 Pfam AUX/IAA family 19 233 IPR033389 -
Prci1g4534 242 ProSiteProfiles PB1 domain profile. 123 224 IPR000270 GO:0005515
Prci1g4534 242 SUPERFAMILY CAD & PB1 domains 113 223 - -
Prci1g4534 242 Gene3D - 117 236 - -
Prci1g4534 242 MobiDBLite consensus disorder prediction 27 51 - -
Prci1g4534 242 MobiDBLite consensus disorder prediction 63 85 - -
Prci1g4534 242 FunFam Auxin-responsive protein 118 234 - -
Prci1g4534 242 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4534 Prci-Chr1 58829436 58831707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4534 117 222 B3 DNA Binding Superfamily AT1G19220 32.075 2.04e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1g4534 AUX_IAA 3.5e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4534 K14484 - cave:132171332 327.405