Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4533 ATGACGGGCTTGAATGAGGCAGAGCAGGATAAGTACAACATGATTAATTTCGAAGAGACCGAATTGCGACTCGGATTGCCCGGTGCTTCCGCCGCCGCCGCCGACACGGAGTCTTCACTCAAGAACAACTGGCCTGCTGGTGGCAAGAGAGGCTTCTCCGACACCGCTGTGGATTTGAAGCTCAATCTCTCTTCCAACACTGCACAGTCACCCCACAAGCCTGTCGACAACACAACTGCTGCCTCTCCCTCAAACGATCCCGCGAAGCCACCCGCTAAAATGAAAATTAGGCAGAGTCAGACACGGGGAAATGGGATAACTACGAGGGCTCAGGTAGTGGGTTGGCCACCGGTGCGATCATTCAGGAAGAACATCGGGACGTCGCAGAACCAGAAGAATAACGAGGAAGAAGGAGCGACGTTCGTAAAGGTGAGCATGGACGGTGCGCCTTATCTGCGCAAAGTGGACTTGAAGCAGTACAAGAGCTACCAACAGCTGTCGGGGGCGCTGGCTAAAATGTTTAGCTCCTTCACCAACGCCGATTACGGCTCCCCTCAAGCCACCAAGGACTTCCTCAACGAGAGCAAGTTGATCGATCTCTTGAACGGCTCCGACTACGTCCCCACTTACGAAGACAAGGAGGGAGATTGGATGCTTGTCGGCGACGTCCCCTGGGAAATGTTCGTGGAGTCCTGCAAGCGCCTCCGCATCATGAAAGGATCCGACGCAATTGGCCTGGCGCCGAGGGCAGTGGAAAAATGCAAGAGCAGAAGCTGA 777 0.547 MTGLNEAEQDKYNMINFEETELRLGLPGASAAAADTESSLKNNWPAGGKRGFSDTAVDLKLNLSSNTAQSPHKPVDNTTAASPSNDPAKPPAKMKIRQSQTRGNGITTRAQVVGWPPVRSFRKNIGTSQNQKNNEEEGATFVKVSMDGAPYLRKVDLKQYKSYQQLSGALAKMFSSFTNADYGSPQATKDFLNESKLIDLLNGSDYVPTYEDKEGDWMLVGDVPWEMFVESCKRLRIMKGSDAIGLAPRAVEKCKSRS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4533 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 245 IPR003311 GO:0005634|GO:0006355
Prci1g4533 258 MobiDBLite consensus disorder prediction 58 85 - -
Prci1g4533 258 ProSiteProfiles PB1 domain profile. 139 240 IPR000270 GO:0005515
Prci1g4533 258 Pfam AUX/IAA family 19 249 IPR033389 -
Prci1g4533 258 Gene3D - 133 252 - -
Prci1g4533 258 SUPERFAMILY CAD & PB1 domains 129 239 - -
Prci1g4533 258 MobiDBLite consensus disorder prediction 33 103 - -
Prci1g4533 258 FunFam Auxin-responsive protein 134 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4533 Prci-Chr1 58829434 58831707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4533 123 256 B3 DNA Binding Superfamily AT1G30330 28.358 2.16e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1g4533 AUX_IAA 3.2e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4533 K14484 - qsa:O6P43_007636 320.087