LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g4517	ATGGAGCAGTATGAAATACTGGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAGAAATATGTGCTGAAGAAGATCCGCCTGGCCCGCCAAACTGAGCGGTCTCGTAGATCTGCGCACCAGGAGATGGAGCTAATCTCTAAGTTCAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTGTGCATCATTATAGGTTACTGTGAGGGTGGAGATATGGCGGAAGCTATAAAAAAAGCAAATGGAATTCTTTTTCCAGAGGAGAAACTTTGCAAGTGGCTTGTTCAGCTTCTTATGGCACTTGACTACTTGCACATGAACCATATTCTTCATCGGGATGTCAAGTGTTCGAATATATTTTTGACGAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCTTCTGTCGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTATATATGAAATGACGGCACATAAGCCTGCTTTTAAAGCATTTGATATACAAGCACTGATAAACAAGATTAACAAGTCCATAGTGGCCCCACTGCCAACAAAGTATTCTGGTGCATTTCGTGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCCGCAGAGTTGCTTGGGCACCCTCATCTTCAACCTTACATTCTCAAGATCCATTTTAAAATCAGTAACCCCAGACGAAGTACGCTCCCGGCCCATTGGCCAGGCTCCAAATACACGAAGAAAACTAGATTTGTGGAGCCAGGAGATGATCCTACTTCCACCTGCAGGGATAAGTGGAATTCTTTTAAAAATGACCGGACTTTGAATCCTAGCATATCTGGAGCTGAGCAAGATTCTGCATGCTCTACCTTAGAAATAGATTGCACTCCGGATCATTTGAATCACCCGCTAGCAGAACTGTGCGTTGGGGATAGCCCTGGAGTGAACAAAATCCGTAAGCCTGGTGTTTCCAGGAATTCAAGCATTTCCAGAACTCCAAGATTGACATCGTCAAAAACTTTTGCCAGCCCTAAGAAACAGATGGAGTTTTCAAGGAATCGTGAGCTGCATCCTATTTCACACAATGCCAGAAAATCGCTCCATGCAACTCGCAGAGCATCATTTCCGTTACCAGAAAGAGGTGCTGTTCTTGGCCATGCAAAATCACCTCATATTTCAGTAAACTCTCCCCGAATTGACAGGATAGCTGAATTCCCATTAACATCGTTTGAGGGTCCACTGTTTCCCGTTAATAGAACTTCATCAACCTCTGCACAGGGTTCGTCAGTCTCCCCGCCCTGTGGTGATCGTTCAATCATGAAAGATAAATGCACTGTTGAGGTATCTGATAGAGCTGCTGTCAGGCCTAGTTTGACCGATGCCTTGCAAAGAACCAAATGCAGCGTGTATGAGGAAAATGATGAGGTGAAAAGCGGCTCCTCTGATCAAAATGCAACTGCCGGTGCATCAAGCCATACCTCTTCAGACTGGCGCCGCAGGCATTTTGACACTTCATCATATCAACAAAGAGCTGAAGCCTTAGAAGGGTTGCTGGAATTTAGTGCAAGGTTGCTACAGCAGGAAAGATATGAAGAACTTGGGGTCTTGTTGAAGCCGTTTGGACCTGGGAAGGTCTCTCCACGTGAAACTGCTATATGGTTGAGTAAAAGCTTCAAGGAAAACACTCAACCGTGA	1818	0.4433	MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYILKIHFKISNPRRSTLPAHWPGSKYTKKTRFVEPGDDPTSTCRDKWNSFKNDRTLNPSISGAEQDSACSTLEIDCTPDHLNHPLAELCVGDSPGVNKIRKPGVSRNSSISRTPRLTSSKTFASPKKQMEFSRNRELHPISHNARKSLHATRRASFPLPERGAVLGHAKSPHISVNSPRIDRIAEFPLTSFEGPLFPVNRTSSTSAQGSSVSPPCGDRSIMKDKCTVEVSDRAAVRPSLTDALQRTKCSVYEENDEVKSGSSDQNATAGASSHTSSDWRRRHFDTSSYQQRAEALEGLLEFSARLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQP	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	520	534	-	-
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	458	480	-	-
	Prci1g4517	605	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
	Prci1g4517	605	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Prci1g4517	605	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Prci1g4517	605	Pfam	Protein kinase domain	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4517	605	SUPERFAMILY	Protein kinase-like (PK-like)	1	299	IPR011009	-
	Prci1g4517	605	FunFam	Serine/threonine-protein kinase Nek2	84	274	-	-
	Prci1g4517	605	Gene3D	Transferase(Phosphotransferase) domain 1	84	271	-	-
	Prci1g4517	605	ProSiteProfiles	Protein kinase domain profile.	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	513	541	-	-
	Prci1g4517	605	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	560	-	-
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	458	474	-	-
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	360	390	-	-
	Prci1g4517	605	MobiDBLite	consensus disorder prediction	362	388	-	-
	Prci1g4517	605	CDD	STKc_Nek	3	258	-	-
	Prci1g4517	605	SMART	serkin_6	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4517	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g4517	Prci-Chr1	58650884	58656998	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g4517	10	259	MAP Kinase Kinase Kinase	AT1G53570	31.765	7.37e-37	142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Prci1g4517		Pkinase	1.7e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g4517	K08857		-	gmx:100804898	954.896