LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g4516	ATGGAGCAGTATGAAATACTGGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAGAAATATGTGCTGAAGAAGATCCGCCTGGCCCGCCAAACTGAGCGGTCTCGTAGATCTGCGCACCAGGAGATGGAGCTAATCTCTAAGTTCAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTGTGCATCATTATAGGTTACTGTGAGGGTGGAGATATGGCGGAAGCTATAAAAAAAGCAAATGGAATTCTTTTTCCAGAGGAGAAACTTTGCAAGTGGCTTGTTCAGCTTCTTATGGCACTTGACTACTTGCACATGAACCATATTCTTCATCGGGATGTCAAGTGTTCGAATATATTTTTGACGAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCTTCTGTCGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTATATATGAAATGACGGCACATAAGCCTGCTTTTAAAGCATTTCAGGATATACAAGCACTGATAAACAAGATTAACAAGTCCATAGTGGCCCCACTGCCAACAAAGTATTCTGGTGCATTTCGTGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCCGCAGAGTTGCTTGGGCACCCTCATCTTCAACCTTACATTCTCAAGATCCATTTTAAAATCAGTAACCCCAGACGAAGTACGCTCCCGGCCCATTGGCCAGGCTCCAAATACACGAAGAAAACTAGATTTGTGGAGCCAGGAGATGATCCTACTTCCACCTGCAGGGATAAGTGGAATTCTTTTAAAAATGACCGGACTTTGAATCCTAGCATATCTGGAGCTGAGCAAGATTCTGCATGCTCTACCTTAGAAATAGATTGCACTCCGGATCATTTGAATCACCCGCTAGCAGAACTGTGCGTTGGGGATAGCCCTGGAGTGAACAAAATCCGTAAGCCTGGTGTTTCCAGGAATTCAAGCATTTCCAGAACTCCAAGATTGACATCGTCAAAAACTTTTGCCAGCCCTAAGAAACAGATGGAGTTTTCAAGGAATCGTGAGCTGCATCCTATTTCACACAATGCCAGAAAATCGCTCCATGCAACTCGCAGAGCATCATTTCCGTTACCAGAAAGAGGTGCTGTTCTTGGCCATGCAAAATCACCTCATATTTCAGTAAACTCTCCCCGAATTGACAGGATAGCTGAATTCCCATTAACATCGTTTGAGGGTCCACTGTTTCCCGTTAATAGAACTTCATCAACCTCTGCACAGGGTTCGTCAGTCTCCCCGCCCTGTGGTGATCGTTCAATCATGAAAGATAAATGCACTGTTGAGGTATCTGATAGAGCTGCTGTCAGGCCTAGTTTGACCGATGCCTTGCAAAGAACCAAATGCAGCGTGTATGAGGAAAATGATGAGGTGAAAAGCGGCTCCTCTGATCAAAATGCAACTGCCGGTGCATCAAGCCATACCTCTTCAGACTGGCGCCGCAGGCATTTTGACACTTCATCATATCAACAAAGAGCTGAAGCCTTAGAAGGGTTGCTGGAATTTAGTGCAAGGTTGCTACAGCAGGAAAGATATGAAGAACTTGGGGTCTTGTTGAAGCCGTTTGGACCTGGGAAGGTCTCTCCACGTGAAACTGCTATATGGTTGAGTAAAAGCTTCAAGGAAAACACTCAACCGTGA	1821	0.4437	MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFQDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYILKIHFKISNPRRSTLPAHWPGSKYTKKTRFVEPGDDPTSTCRDKWNSFKNDRTLNPSISGAEQDSACSTLEIDCTPDHLNHPLAELCVGDSPGVNKIRKPGVSRNSSISRTPRLTSSKTFASPKKQMEFSRNRELHPISHNARKSLHATRRASFPLPERGAVLGHAKSPHISVNSPRIDRIAEFPLTSFEGPLFPVNRTSSTSAQGSSVSPPCGDRSIMKDKCTVEVSDRAAVRPSLTDALQRTKCSVYEENDEVKSGSSDQNATAGASSHTSSDWRRRHFDTSSYQQRAEALEGLLEFSARLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQP	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g4516	606	SMART	serkin_6	4	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4516	606	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
	Prci1g4516	606	CDD	STKc_Nek	3	259	-	-
	Prci1g4516	606	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Prci1g4516	606	ProSiteProfiles	Protein kinase domain profile.	4	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4516	606	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Prci1g4516	606	Gene3D	Transferase(Phosphotransferase) domain 1	84	272	-	-
	Prci1g4516	606	FunFam	Serine/threonine-protein kinase Nek2	84	275	-	-
	Prci1g4516	606	SUPERFAMILY	Protein kinase-like (PK-like)	1	300	IPR011009	-
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	459	481	-	-
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	521	535	-	-
	Prci1g4516	606	Pfam	Protein kinase domain	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	459	475	-	-
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	361	391	-	-
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	363	389	-	-
	Prci1g4516	606	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	561	-	-
	Prci1g4516	606	MobiDBLite	consensus disorder prediction	514	542	-	-
	Prci1g4516	606	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g4516	Prci-Chr1	58650880	58656998	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g4516	10	260	MAP Kinase Kinase Kinase	AT1G53570	30.196	8.19e-37	142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Prci1g4516		Pkinase	5.3e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g4516	K08857		-	gmx:100804898	950.273