Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4440 ATGATCGGAAGAGGTGGCTATTCTGAAGTTTACTGGGGTCGTCTCGGAGATGGGAGTTTAGTAGCTATCAAGAGATTGACTAAAGGGACTCCAGACGAGAGGACTGCAAGCTTTCTATCTGAGCTAGGTATTATTGCTCATGTTGACCATTCCAATATTGCAAAGCTTATTGGATGTGATGTAGGAGGTATGCACCTTGTCTTCCAACTTTCTCGACTGGGAAGCTTAGGATCTCTCCTTCATGATCCAAGTAAAAGCAAGTTAGATTGGAGTAAAAGGTATAAGATTGCTCTGGGCGTAGCCAATGGCCTCCTCTACCTTCATGAGAGTTGTCACAGGCGAATCATTCATAGAGATATCAAGTCAGATAATATACTGCTCACTGAAAGCTTTGAGCCACAGATCTGTGACTTTGGGCTGGCAAAGTGGTTACCCAAACAATGCACTCACCATAATGTATCAAAATTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGTGTAGTGGATGAGAAAACTGACGTTTATTCTTTTGGGGTTATATTGTTGGAGCTTATAACTGGGCGTCCAGCTGTGGATGAAAATCAGCTTAGTGTTGTACTATGGGCAAAGCCTTTGCTTGATGATAATAATATTAAGGACCTTGTTGATCCTTGTCTTCGAAACGACTATGACAGAGAACAGATGGATCGGGTTGTTTTGACTGCATCTCTGTGCATTGAGCACTCTCCTGTCTTGCGTCCCTGCATGAGTCAGGTTGCAATACTGCTAAGAGATGATGACTATGTGAGACAACCTACAAATGCAAGCCGAAGGTGGTCTTTCCTTAGAACATACTCTCAAGAGCTTTTGGATGCTCAAGAATACAACTCAACTAAGTATCTAAATGATCTCAATCAACACAAGAAGATTGCTCTGGGATCTTAA 939 0.4217 MIGRGGYSEVYWGRLGDGSLVAIKRLTKGTPDERTASFLSELGIIAHVDHSNIAKLIGCDVGGMHLVFQLSRLGSLGSLLHDPSKSKLDWSKRYKIALGVANGLLYLHESCHRRIIHRDIKSDNILLTESFEPQICDFGLAKWLPKQCTHHNVSKFEGTFGYFAPEYFMHGVVDEKTDVYSFGVILLELITGRPAVDENQLSVVLWAKPLLDDNNIKDLVDPCLRNDYDREQMDRVVLTASLCIEHSPVLRPCMSQVAILLRDDDYVRQPTNASRRWSFLRTYSQELLDAQEYNSTKYLNDLNQHKKIALGS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4440 312 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Prci1g4440 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Prci1g4440 312 SMART serkin_6 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4440 312 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4440 312 SUPERFAMILY Protein kinase-like (PK-like) 1 270 IPR011009 -
Prci1g4440 312 PANTHER OS08G0249100 PROTEIN 1 305 IPR046958 -
Prci1g4440 312 Pfam Protein tyrosine and serine/threonine kinase 2 257 IPR001245 GO:0004672|GO:0006468
Prci1g4440 312 Gene3D Phosphorylase Kinase; domain 1 1 69 - -
Prci1g4440 312 Gene3D Transferase(Phosphotransferase) domain 1 72 276 - -
Prci1g4440 312 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 72 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4440 Prci-Chr1 58318232 58320880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4440 2 307 Receptor kinase-like Gene Family AT1G53420 38.535 1.42e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1g4440 PK_Tyr_Ser-Thr 6.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4440 - - pper:18775324 475.322