Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4439 ATGCTACGCAGGGACAATAGAATGGATTCTGTCAACAAAATAGAGATAGTCCCAGCCAATGATTCTTTAGTCAAACATAGCAAACGAAGCTTTCTGTTTCGTTCCTCCACTTCTGCCCAAGACTTGAGACATTTTGAACTTGAGAAGGAGAAAGAAGACGTTTCATCTCCTAGAGGAGTGTTAGAAGCCTGCATACGAGACTTTGATTCTTCTCTACAATCATCCGAAATGGAGAATCGCTGTTCAAGGTCCAGGGCACAAATTAGTTGGAGCAAATATTTAAAAAATTTGAAGAAGAGGTCAATTAAGCGTCTAGCATCCTTCCCTCCTCTTGTTGCACCAACGATAGCAAAAGGGAAAAGCAAAAGCAGTAGAGAAAATCCTGTTTTGACTAATGTATACAACTTTAGATCTTCGTTGGCGAACTTCACACTCTCTGAATTGATAAATGCAACCAACAATTTTAGCAATGAAAATATGATCGGAAGAGGTGGCTATTCTGAAGTTTACTGGGGTCGTCTCGGAGATGGGAGTTTAGTAGCTATCAAGAGATTGACTAAAGGGACTCCAGACGAGAGGACTGCAAGCTTTCTATCTGAGCTAGGTATTATTGCTCATGTTGACCATTCCAATATTGCAAAGCTTATTGGATGTGATGTAGGAGGTATGCACCTTGTCTTCCAACTTTCTCGACTGGGAAGCTTAGGATCTCTCCTTCATGATCCAAGTAAAAGCAAGTTAGATTGGAGTAAAAGGTATAAGATTGCTCTGGGCGTAGCCAATGGCCTCCTCTACCTTCATGAGAGTTGTCACAGGCGAATCATTCATAGAGATATCAAGTCAGATAATATACTGCTCACTGAAAGCTTTGAGCCACAGATCTGTGACTTTGGGCTGGCAAAGTGGTTACCCAAACAATGCACTCACCATAATGTATCAAAATTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGTGTAGTGGATGAGAAAACTGACGTTTATTCTTTTGGGGTTATATTGTTGGAGCTTATAACTGGGCGTCCAGCTGTGGATGAAAATCAGCTTAGTGTTGTACTATGGGCAAAGCCTTTGCTTGATGATAATAATATTAAGGACCTTGTTGATCCTTGTCTTCGAAACGACTATGACAGAGAACAGATGGATCGGGTTGTTTTGACTGCATCTCTGTGCATTGAGCACTCTCCTGTCTTGCGTCCCTGCATGAGTCAGGTTGCAATACTGCTAAGAGATGATGACTATGTGAGACAACCTACAAATGCAAGCCGAAGGTGGTCTTTCCTTAGAACATACTCTCAAGAGCTTTTGGATGCTCAAGAATACAACTCAACTAAGTATCTAAATGATCTCAATCAACACAAGAAGATTGCTCTGGGATCTTAA 1416 0.4117 MLRRDNRMDSVNKIEIVPANDSLVKHSKRSFLFRSSTSAQDLRHFELEKEKEDVSSPRGVLEACIRDFDSSLQSSEMENRCSRSRAQISWSKYLKNLKKRSIKRLASFPPLVAPTIAKGKSKSSRENPVLTNVYNFRSSLANFTLSELINATNNFSNENMIGRGGYSEVYWGRLGDGSLVAIKRLTKGTPDERTASFLSELGIIAHVDHSNIAKLIGCDVGGMHLVFQLSRLGSLGSLLHDPSKSKLDWSKRYKIALGVANGLLYLHESCHRRIIHRDIKSDNILLTESFEPQICDFGLAKWLPKQCTHHNVSKFEGTFGYFAPEYFMHGVVDEKTDVYSFGVILLELITGRPAVDENQLSVVLWAKPLLDDNNIKDLVDPCLRNDYDREQMDRVVLTASLCIEHSPVLRPCMSQVAILLRDDDYVRQPTNASRRWSFLRTYSQELLDAQEYNSTKYLNDLNQHKKIALGS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4439 471 Gene3D Phosphorylase Kinase; domain 1 115 227 - -
Prci1g4439 471 Pfam Protein tyrosine and serine/threonine kinase 158 416 IPR001245 GO:0004672|GO:0006468
Prci1g4439 471 ProSiteProfiles Protein kinase domain profile. 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4439 471 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 231 434 - -
Prci1g4439 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Prci1g4439 471 SMART serkin_6 155 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4439 471 PANTHER OS08G0249100 PROTEIN 36 464 IPR046958 -
Prci1g4439 471 SUPERFAMILY Protein kinase-like (PK-like) 135 418 IPR011009 -
Prci1g4439 471 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Prci1g4439 471 Gene3D Transferase(Phosphotransferase) domain 1 231 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4439 Prci-Chr1 58316719 58320880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4439 138 470 Trihelix Transcription Factor Family AT1G70460 39.067 9.42e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1g4439 PK_Tyr_Ser-Thr 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4439 - - qsa:O6P43_011144 626.32