Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4436 ATGGATTCTGTCAACAAAATAGAGATAGTCCCAGCCAATGATTCTTTAGTCAAACATAGCAAACGAAGCTTTCTGTTTCGTTCCTCCACTTCTGCCCAAGACTTGAGACATTTTGAACTTGAGAAGGAGAAAGAAGACGTTTCATCTCCTAGAGGAGTGTTAGAAGCCTGCATACGAGACTTTGATTCTTCTCTACAATCATCCGAAATGGAGAATCGCTGTTCAAGGTCCAGGGCACAAATTAGTTGGAGCAAATATTTAAAAAATTTGAAGAAGAGGTCAATTAAGCGTCTAGCATCCTTCCCTCCTCTTGTTGCACCAACGATAGCAAAAGGGAAAAGCAAAAGCAGTAGAGAAAATCCTGTTTTGACTAATGTATACAACTTTAGATCTTCGTTGGCGAACTTCACACTCTCTGAATTGATAAATGCAACCAACAATTTTAGCAATGAAAATATGATCGGAAGAGGTGGCTATTCTGAAGTTTACTGGGGTCGTCTCGGAGATGGGAGTTTAGTAGCTATCAAGAGATTGACTAAAGGGACTCCAGACGAGAGGACTGCAAGCTTTCTATCTGAGCTAGGTATTATTGCTCATGTTGACCATTCCAATATTGCAAAGCTTATTGGATGTGATGTAGGAGGTATGCACCTTGTCTTCCAACTTTCTCGACTGGGAAGCTTAGGATCTCTCCTTCATGATCCAAGTAAAAGCAAGTTAGATTGGAGTAAAAGGTATAAGATTGCTCTGGGCGTAGCCAATGGCCTCCTCTACCTTCATGAGAGTTGTCACAGGCGAATCATTCATAGAGATATCAAGTCAGATAATATACTGCTCACTGAAAGCTTTGAGCCACAGATCTGTGACTTTGGGCTGGCAAAGTGGTTACCCAAACAATGCACTCACCATAATGTATCAAAATTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGTGTAGTGGATGAGAAAACTGACGTTTATTCTTTTGGGGTTATATTGTTGGAGCTTATAACTGGGCGTCCAGCTGTGGATGAAAATCAGCTTAGTGTTGTACTATGGGCAAAGCCTTTGCTTGATGATAATAATATTAAGGACCTTGTTGATCCTTGTCTTCGAAACGACTATGACAGAGAACAGATGGATCGGGTTGTTTTGACTGCATCTCTGTGCATTGAGCACTCTCCTGTCTTGCGTCCCTGCATGAGTCAGGTTGCAATACTGCTAAGAGATGATGACTATGTGAGACAACCTACAAATGCAAGCCGAAGGTGGTCTTTCCTTAGAACATACTCTCAAGAGCTTTTGGATGCTCAAGAATACAACTCAACTAAGTATCTAAATGATCTCAATCAACACAAGAAGATTGCTCTGGGATCTTAA 1395 0.4108 MDSVNKIEIVPANDSLVKHSKRSFLFRSSTSAQDLRHFELEKEKEDVSSPRGVLEACIRDFDSSLQSSEMENRCSRSRAQISWSKYLKNLKKRSIKRLASFPPLVAPTIAKGKSKSSRENPVLTNVYNFRSSLANFTLSELINATNNFSNENMIGRGGYSEVYWGRLGDGSLVAIKRLTKGTPDERTASFLSELGIIAHVDHSNIAKLIGCDVGGMHLVFQLSRLGSLGSLLHDPSKSKLDWSKRYKIALGVANGLLYLHESCHRRIIHRDIKSDNILLTESFEPQICDFGLAKWLPKQCTHHNVSKFEGTFGYFAPEYFMHGVVDEKTDVYSFGVILLELITGRPAVDENQLSVVLWAKPLLDDNNIKDLVDPCLRNDYDREQMDRVVLTASLCIEHSPVLRPCMSQVAILLRDDDYVRQPTNASRRWSFLRTYSQELLDAQEYNSTKYLNDLNQHKKIALGS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4436 464 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 224 427 - -
Prci1g4436 464 SMART serkin_6 148 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4436 464 Gene3D Phosphorylase Kinase; domain 1 108 220 - -
Prci1g4436 464 Gene3D Transferase(Phosphotransferase) domain 1 224 428 - -
Prci1g4436 464 SUPERFAMILY Protein kinase-like (PK-like) 128 411 IPR011009 -
Prci1g4436 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Prci1g4436 464 ProSiteProfiles Protein kinase domain profile. 148 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4436 464 ProSitePatterns Protein kinases ATP-binding region signature. 154 176 IPR017441 GO:0005524
Prci1g4436 464 Pfam Protein tyrosine and serine/threonine kinase 151 409 IPR001245 GO:0004672|GO:0006468
Prci1g4436 464 PANTHER OS08G0249100 PROTEIN 33 457 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4436 Prci-Chr1 58316719 58320880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4436 131 463 Trihelix Transcription Factor Family AT1G70460 39.067 5.89e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1g4436 PK_Tyr_Ser-Thr 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4436 - - gmx:100781529 622.468