Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4435 ATGCTACGCAGGGACAATAGAATGGATTCTGTCAACAAAATAGAGATAGTCCCAGCCAATGATTCTTTAGTCAAACATAGCAAACGAAGCTTTCTGTTTCGTTCCTCCACTTCTGCCCAAGAAAATATGATCGGAAGAGGTGGCTATTCTGAAGTTTACTGGGGTCGTCTCGGAGATGGGAGTTTAGTAGCTATCAAGAGATTGACTAAAGGGACTCCAGACGAGAGGACTGCAAGCTTTCTATCTGAGCTAGGTATTATTGCTCATGTTGACCATTCCAATATTGCAAAGCTTATTGGATGTGATGTAGGAGGTATGCACCTTGTCTTCCAACTTTCTCGACTGGGAAGCTTAGGATCTCTCCTTCATGATCCAAGTAAAAGCAAGTTAGATTGGAGTAAAAGGTATAAGATTGCTCTGGGCGTAGCCAATGGCCTCCTCTACCTTCATGAGAGTTGTCACAGGCGAATCATTCATAGAGATATCAAGTCAGATAATATACTGCTCACTGAAAGCTTTGAGCCACAGATCTGTGACTTTGGGCTGGCAAAGTGGTTACCCAAACAATGCACTCACCATAATGTATCAAAATTTGAGGGCACATTTGGGTATTTTGCTCCTGAATATTTCATGCATGGTGTAGTGGATGAGAAAACTGACGTTTATTCTTTTGGGGTTATATTGTTGGAGCTTATAACTGGGCGTCCAGCTGTGGATGAAAATCAGCTTAGTGTTGTACTATGGGCAAAGCCTTTGCTTGATGATAATAATATTAAGGACCTTGTTGATCCTTGTCTTCGAAACGACTATGACAGAGAACAGATGGATCGGGTTGTTTTGACTGCATCTCTGTGCATTGAGCACTCTCCTGTCTTGCGTCCCTGCATGAGTCAGGTTGCAATACTGCTAAGAGATGATGACTATGTGAGACAACCTACAAATGCAAGCCGAAGGTGGTCTTTCCTTAGAACATACTCTCAAGAGCTTTTGGATGCTCAAGAATACAACTCAACTAAGTATCTAAATGATCTCAATCAACACAAGAAGATTGCTCTGGGATCTTAA 1065 0.4197 MLRRDNRMDSVNKIEIVPANDSLVKHSKRSFLFRSSTSAQENMIGRGGYSEVYWGRLGDGSLVAIKRLTKGTPDERTASFLSELGIIAHVDHSNIAKLIGCDVGGMHLVFQLSRLGSLGSLLHDPSKSKLDWSKRYKIALGVANGLLYLHESCHRRIIHRDIKSDNILLTESFEPQICDFGLAKWLPKQCTHHNVSKFEGTFGYFAPEYFMHGVVDEKTDVYSFGVILLELITGRPAVDENQLSVVLWAKPLLDDNNIKDLVDPCLRNDYDREQMDRVVLTASLCIEHSPVLRPCMSQVAILLRDDDYVRQPTNASRRWSFLRTYSQELLDAQEYNSTKYLNDLNQHKKIALGS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4435 354 Pfam Protein tyrosine and serine/threonine kinase 41 299 IPR001245 GO:0004672|GO:0006468
Prci1g4435 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Prci1g4435 354 SUPERFAMILY Protein kinase-like (PK-like) 27 301 IPR011009 -
Prci1g4435 354 Gene3D Transferase(Phosphotransferase) domain 1 114 318 - -
Prci1g4435 354 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 114 317 - -
Prci1g4435 354 PANTHER OS08G0249100 PROTEIN 39 347 IPR046958 -
Prci1g4435 354 Gene3D Phosphorylase Kinase; domain 1 22 111 - -
Prci1g4435 354 ProSiteProfiles Protein kinase domain profile. 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g4435 354 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Prci1g4435 354 SMART serkin_6 38 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4435 Prci-Chr1 58316719 58320880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4435 39 353 Trihelix Transcription Factor Family AT1G70460 38.769 1.38e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1g4435 PK_Tyr_Ser-Thr 2.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4435 - - pper:18775324 479.174