Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4429 ATGGTCCTCGAGGCTGTGGTCTATCCCCCCGACCCTCTCTCTTATGCCGTCAAAGACAATCTATACCCCTTTGGCTTGTTCCTCGACGACTCTCAGCAACATCATCCCTCTCTTGATTTTCTCCACAATAATCACCATCCTCATCTCCATGCTGCAGATTGGGACTGTTCATCCCCACCCCACTTCAGCCATGTTCCTCTCTCCAACCCTTCCTCCTCCGACCCCACCAATGCCGCCATTTCGCTCCCTACTCATCCCCACCTCCTGGATTCTGCTCCTGCTCCGGTCCGTCCCAAGCGCCGCAGACCCAAAACCCGAAAGAATCAGCAAGAAATTGAGAACCAGCGGATGACTCACATTGCCGTGGAGCGCAATCGGAGGAAACAAATGAATGACTATCTCTCCGTTCTTCGCTCTTTGATGCCTGACTCCTACGTCCAAAGGGGTGACCAGGCTTCTATAATCGGAGGAGCTATTAACTTCGTGAAGGAGCTCGAGCAAAGGCTGCAATTCCTGGGTTCTCAGAAACAGACAGAGGGGACGTGGGAATCGAGTCCTCCTGCAGAGCTGCCTTTTTCCGAGTTCTTTGCATTTCCTCAGTACTCGGCTACGAGTTCCGGCAGGTGCGACAGTAATTCCGGGCCTGCGGGAGAGGGATCAGAGGTCGATGCGATTCAGTCCGGGATCGCCGATATAGAAGTGACGATGGTGGAGAGCCATGCAAATCTGAAGATAAGATCCCAGAAGCGACCCAAGCAGCTCCTCAAGATAGTCTCCGGCTTGCATAGCATGTGTCTCACCATCATGCACTTAAACGTCACCACCACCGCCCAGATTGTCCTCTATTGTCTCAGTGTTAAGGTAGAAGATGATTGCAAGCTGTGTTCGGTGGATGACATAGCCGCGGCTCTCTTTCAGATGATGGACAGTATTCATCGGGAGGCACTGCTGTGCTAA 957 0.5266 MVLEAVVYPPDPLSYAVKDNLYPFGLFLDDSQQHHPSLDFLHNNHHPHLHAADWDCSSPPHFSHVPLSNPSSSDPTNAAISLPTHPHLLDSAPAPVRPKRRRPKTRKNQQEIENQRMTHIAVERNRRKQMNDYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGSQKQTEGTWESSPPAELPFSEFFAFPQYSATSSGRCDSNSGPAGEGSEVDAIQSGIADIEVTMVESHANLKIRSQKRPKQLLKIVSGLHSMCLTIMHLNVTTTAQIVLYCLSVKVEDDCKLCSVDDIAAALFQMMDSIHREALLC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4429 318 CDD bHLH_AtFAMA_like 117 187 - -
Prci1g4429 318 SMART finulus 120 171 IPR011598 GO:0046983
Prci1g4429 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 178 IPR036638 GO:0046983
Prci1g4429 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
Prci1g4429 318 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Prci1g4429 318 PANTHER MAX DIMERIZATION, MAD 48 314 - -
Prci1g4429 318 MobiDBLite consensus disorder prediction 64 80 - -
Prci1g4429 318 MobiDBLite consensus disorder prediction 64 115 - -
Prci1g4429 318 Gene3D - 104 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4429 Prci-Chr1 58272689 58274946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4429 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.154 1.54e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g4429 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4429 - - gmx:100782243 340.887