Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4428 ATGATCAAGACCCTCTCTCTCTATGGACTCTTCCTCCTCCTCCTCCCCACCCTCGTTGCTCCTCAGCCCCCCTCCAATGACCAAACCGATCAGCTCAACAACTTCACCCCTTCCATGGCAATCATCATCGTCATCTTGATCGCCGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGCCACTGCGCCGATTCTCCCTCCGGCAGCGTTCGCCCCTTGGGACTCGGTGCTTCCGTCCGTCGTTCCAGGCGTGCTCCTCGCGGTCTCGACCCGACAGTCATCCAGGCCTTTCCCACCCTTCAGTACTCTCTCGTCAAGAATCACAAGATCGGCAAAGGCGCCCTCGAGTGCGCCGTCTGCTTGTCCGAGTTCGAAGATTCCGAAACCCTGCGTTTGATACCCAAGTGCGATCACGTCTTCCACCCAGAGTGCATCGACGAGTGGCTGGCTTCCCATACCACCTGCCCCGTCTGCCGAGCCGACCTCGTTCCTCAGCCCGATCAGTCCGTCCGCGGAGTTCCGAGCGTCGACCCCGATGCCGTGGACCTTGAAGCTCAAAACCAAGTCGTGGAACCAGAGCCCGAGCAACAACATACTATGGAGGCTTATCCCGAACCGGCGGAGCCCGAAGTTCTATGCCTCAATCAGACGATGAGACGGAACCGCACGCGAGGGTCTCGATCGGGTCGGACGCGGAGGTTTCCCCGGTCGCACTCGACCGGGCACTCGTTGGTCCAGCCGGGCGAGGACACGGAACGTTTCACTCTGAGATTGCCCGTGGAAGTGAGGAATCAGATATTGAACCGGGAATTACATCGGTCTACAAGCATGGTTGTGTTGCCGAGGGAAGGTAGCTCGAGACGGGGCTATCGAATTGGCGGTGATGGCAGCAGCAGAGGGAGGTATTCGAGGCGGCTGGACCATGGTATTAAATCGGACCGATGGGTTTTCACGATGGCGCCGCCGTTCCTTGTGAGGGCATCGTCCATCAGGTCCCCGAAAGTGGGAGGGAGAGCCGGTGAAGGAACCTCCGCTCAGCCGGTCGTGCCGGCGGCGGCGGGTGCGGCCAGGCCTCTGGTTTAA 1086 0.5967 MIKTLSLYGLFLLLLPTLVAPQPPSNDQTDQLNNFTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGLGASVRRSRRAPRGLDPTVIQAFPTLQYSLVKNHKIGKGALECAVCLSEFEDSETLRLIPKCDHVFHPECIDEWLASHTTCPVCRADLVPQPDQSVRGVPSVDPDAVDLEAQNQVVEPEPEQQHTMEAYPEPAEPEVLCLNQTMRRNRTRGSRSGRTRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRNQILNRELHRSTSMVVLPREGSSRRGYRIGGDGSSRGRYSRRLDHGIKSDRWVFTMAPPFLVRASSIRSPKVGGRAGEGTSAQPVVPAAAGAARPLV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4428 361 MobiDBLite consensus disorder prediction 334 361 - -
Prci1g4428 361 MobiDBLite consensus disorder prediction 222 248 - -
Prci1g4428 361 SMART ring_2 118 159 IPR001841 -
Prci1g4428 361 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
Prci1g4428 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Prci1g4428 361 MobiDBLite consensus disorder prediction 224 238 - -
Prci1g4428 361 SUPERFAMILY RING/U-box 111 167 - -
Prci1g4428 361 Pfam Ring finger domain 117 160 IPR001841 -
Prci1g4428 361 PANTHER RING FINGER DOMAIN-CONTAINING 22 169 - -
Prci1g4428 361 CDD RING-H2_EL5-like 117 160 - -
Prci1g4428 361 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4428 Prci-Chr1 58211766 58213118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4428 10 348 Rapid Response to Elicitors AT3G05200 47.399 1.85e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4428 K10664 - gmx:100810865 413.69