Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4412 ATGGCAGACTCACAGTGTAATTCGAAAATGTTCAGTATACGGATTGTGTCTATCGACTACTACATGGCACAGCCGATTCCAGGCCTGGATATCTGTTACAGTAGTTTCCATGGTGGGAAAGTGAATGAGGTTCCCGTTATAAGAATATATGGTTCTACTCCAGCTGGGCAGAAAACTTGTTTGCATATACATCGGGCTTTGCCCTACATATATGTGCCATGCGCTGATATACCTCTTCAGTCAGATCAAGAAGGAGATGTGTACACATATAAGGTATCTGCATCTCTTGAGAAAGCCTTGAAGCTAAAAGGCAGCAGCGGTTTGACAAGACAACATGTTCATGGCTGCAGCCTTGTAAAAGCAAGGAGATTTTATGGTTATCATTCATCAGAGGAATTATTTGTGAAGATATATCTATATTATCCACAAGATGTCTCCCGTGCTGCTAATCTACTATTGGTCGGTGCTGTTCTTGGCAAAAGCTTACAGCCCTATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGACTATAACTTGTATGGCATGGGTCTCCTGCACTTGTTAAAGTTGAAGTTCCGCCATCCTATGCCAGATTCTTCTCACAAGAAATTGATTTTCAATAATCAACAGACAGGGGCTGATATGGATGGTGATGCGTGTTTAGGGCCAGCAGTGTGGGCCTTATCAATGGTCTCATCTGATTGGATGTGGCAACTTCCAAGTGAATTGGATGCTTCATCAAATCATGAGGCTCATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGCGATGCTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCCCTCTCACAAACCCGATCAGATGTGCAAAAGGTTCAGTCTCTTGTGCCGATTTGGAAGGAGCAGCAAGAAAGGACTGGGATTTATGAGGATACTATAACTCCTGATACTGGGAAGCCACTGCCAGAAGTTGTTATGAGAAGTCTTTCTGGTGGTCTTGACTTTGAGAAAAAATTTGTTGAAATGTGCTGTGAAGCTGAAACCTGTGCATCTTTTATTTCATCTGAAGAGTTGAGAGAAACAGACATAATAGGTTCAGCATCACCACCGGCTTCACTATGCAAAGATGCCAAATTGCATGAAGAAGGGACTGAGGCAAATCTCAGATTGTTGACTGTTGATGAAATGCAATCATCTGAGATTATTGGAACACAGGGCAAAAAGGATGCAGATAAGGAAGCATTGAATCTCCTAAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATTAACTCTGATGATGAACTTATTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGATTACGAAAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGATTCCATTGACGATCAACTTCAGTTGGAGTCATCAAAGAGAAAGCCACCTTTTTCCTCAAATTTTAATTGTCCTGTTGAGTCTTCATCAAACAATATGATTCCCCAAGTTGATGGTTCTGCCGATGATGAGTTTGCAAGCCCAAGTTCTGGTTCAGAGGGAATTTCATTTGCACTGGACAAAAAAGGTGAATCCAAGAGGTCTTCCAAACACTGTATACTGCAAAATACCAGAACAAATACTTATGGCAAAGATAACAGGAATAAAGTATGGGGCACTTTGCCATTGTCAATGACCCATAACAATTTTGATCATGCTAGTTTACATTGTGGCCATACATCTGAAAAGGAAACTGTAGAATCTGTTGACTCAGATTGTTTGGCCAGAAATGAGATGGAGAATAATGGCATAAAGAATGGGGATGAAGGTGTTTCAGACATAAAAGGAGTACAAACACTGGATAATTGCTCTGTGCGGGACTTGATGAGGAGAAAGAGATGCTATCGAGTTGAACAAGCTGACAGTGAATCTGAAATAACTAAAAAACTACATTTAGATGGGGATGAGAAACTGAAAACTGATGGAGAAACAGAAGTCCAGAAGAGCTGTGTTCTGAAAATGACCAATCATGATTTAGTGCGTAAGAAAGCACCCTTTTCTTCTGATTACTCAGAGGTTTCCAGTGGTAAAAAGTTTAAGGTTGACTCAACATATGTACAAACTGACAACTGTCCACAAATTGACATGGCAGCCTTAGGTAGTGTGCAAAGCTCTTCGATTGAGAATATACGGTCTGTCAGAGATAATTTCATGTATAAATGTCCTTATGGAAGCAAATCTTCTGAGCAACACGGTCAGATGAGGTCATGTGATATTGTGGTGGGTGCGAATACTGCAACTGACATTCAAGTATTGCAATGTGTAAAAAGTGATGGCAAAAGACCTAGAGAGAATTTGGGTTTTTATGAGACTAGTGGCATAGAACCTTCGATCAATGACATTATGCGTGATCACATGAGATTAACCTCTACAAGGGCATCTGCCATGGCAGTAACTGACTATTACATTTGTCTGTTTATTGAAGTGAAACCTCTGGATGATGTTATTCCTGCTTTGCTATACTATCAGAATGCTGGCTCTCATCTATGCCTATTGAAACCCAAAATTTTGCCTCCTTCTGAGGGTAATGTCGGAGATGGCTACTTTGCGACGAGAGAGATCAAATGTTTCAACAATCTGATGCAAAGGAGAAGCATATGCCTAAATGGAATACAAGACCTTGTTCTTTGTCTAAACATGTCCAAGATGTTGATTCTGAAAAAGAGTCTCCATGCATCAGCAGTGGGAGAAATGAATATAATCAAAACAAGCTTGGACGGCTCACAAGATACTTCTCAGATATCAGGCCCTGATGTGAAATCAACGCCTACTCCTCTTAGTCAAATTGGATTTTGTGACCCTGCTGCAGATAAGGAAGCATTGAATCTCCTAAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATTAACTCTGATGATGAACTTATTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGATTACGAAAGTGAGTCCCAAAAGGAGTGTCAAGATATTCTTGATTCCATTGACGATCAACTTCAGCTGGAGTCATCAAAGAGAAAGCCACCTTTTTCCTCAAATTTTAATTGTCCTGTTGAGTCTTCATCAAACAATATGATTCCCAAAGTTGATGGTTCTGCCGATGATGAGTTTGCAAGCCCAAGTTCTGGTTCAGAGGGAATTTCATTTGCACTGGACCAAAAAGATGGGGATGAGAAACTCAAAACTGATGGAGAAACAGAAGTCCAGAAGAGCTGTGTCCTGAAAATGACCAATCATGATTTAGTGTGTAGGAAAGCACCCCTTGTAGCTGGCAGTCAAACCGGACTGAGTCTCTGTGGACCGAAGAAGTTTCACTCTACTAGTTCTTCTGATTACTCAGAGGTTTCCAGTGGTAAAAAGTTTAAGGTTGACTCAACACATGTACAAACTGACAACTGTCCACAAATTGACATGGCAGCCTTAGGTAGTGTGCAAAGCTCTTCGATTGAGAATATACAGTCTGTCAGAGATAATTGCATGTATAAATGTCCTTATGGAAGCAAATCTTATGAGCAACACGGTCAGATGAGGTCATGTGATATTGTTGTGGGTGCGAATACTGCAACTGACATTCAAGTATTGCAATGTGGGAAAAGGGTCTTGGGTGTTGCCAAATACTATCAGAATGATGGCTCTCATCTATGCCTATTGAAACCCAAATTTTTGCCTCCTTCTGAGGGTAATGTTCGGAGATGGCTACTTTGTGACGAGAGAGCATATTTTTGGTTGATCCTGGCTTCCGCTTTCCAGATCAAATGTTTCAACAATCTGATGCAAAGGAGAAGCATATGCCTAAATGGAATACAAGACCTTGTCTTATGTCTAAACATGTCCAAGATGTTGATTCTGAAAGAAGTCTCCATGCATCAGCAGTGGAGAAATGAATATAATCAAAACAAGCTTGGACGGCTCGCAGATACTTCTCAGATATCAGGCCCTGATGGGAAATCAACGCCTACTCCTCTTAGTCAAATTGGATTTTGTGACCCTGCAAGAATTGGCTGTGGACAGCAATTGACGGTACTCAGTATTGAGGTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCAGTTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAAAATGATAGTGACACTGTTGTTGATGTTCTCGTCCTTTTGCATTGTAAACTAGAACCTTGTCAAAGAAATTTTGTGAGTCTATCAGGCTGCAAGGTGTTGGTTTTCACAGATGAAAAGCACTTGCTAAAATTTATTAATATTGTATCTTCGTATGATCCAGATATTCTGATGGGTTGGGATATCCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTTGCATCTTGGATTAGGGTTACTTAATAGTTTATCTCGTACTCCATCTGACTCTTGGATTACTTCTGGTGATACTGAAACTTCTAAAGACATATCAGCAACTGCCGTTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCGATAATTGAGGATGAATGGGGACGAACACATTCCAGTGGAGTTCATGTTGGTGGCAGAATTGTGCTTAATGTGTGGCGACTTATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTCCTAACCAAATGGTTTTCTGGTGGTCCTGGAGGAGCAAGGTATCAGTGTGTCAAATATATTACTGAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTTAATCGAACATCAGAACTTGCTCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATACCGTGTCGAATCGATGTTTCTGAGGTTGGCACATACACAAAACTATCTCGCCATCTCTCCTGGGAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCTCTTGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCGGTTATTGTATTTGACTTTCAGTTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGGCATCAAAAGAAAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCGGGATCTAAAAGATCAGATTTTGCTTACTCCAAACGGTGTTATGTTTGTTCCTTCGAAGGTTCGTCGAGGTATACTGCCACACTTGTTGGAAGAAATTTTATCAACTAGGGTAATGGTGAAACAAGCAATGAAAAAGTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTGACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGTGCAGAGCTTGCAGACAGTATTGTTCAATGCGGCCGTTGCACGCTGGAAAGGGCTATATCATTTGTAAATCAGCATGATAAGTGGAACGCAAAAGTCATTTATGGAGATACTGATAGCATGTTTGTTCTTCTCAAAGGACGCACTATTAAAGAATGTTTCCAAATAGGGAGTGAGATTGCTTCTGCTGTCACCGCTATGAATCCTAGTCCTGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAGAAGCGGTATGTTGGTTACAGTTATGAAAGCCCTGATCAAGGTGAGCCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGTAGAGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTCTTTTTTGAAAATAAGGATTTATCGGAGGTGAGAAGTTATTTGCAACGTCAGTGGAAGAAAATTCTTTCGAGCAAAGTCTCCATTAAAGATTTTGTCTTTGCTAAGGAGGTTCGTTTAGGTAGCTATAGTGCAAGGACATCATCTTTACCTCCAGCTGCAATTGTTGCCACCAAGGCAATGAGATTTGACCCTAGGGCAGAACCGCGTTATGCTGAGAGAGTACCTTATGTTGTAATCCACGGAGAGCCTGGAGCCCGCCTGGTTGACGTGGTTGTGGATCCATTGGAAGTTTTGGCACTTAATTCCCCACTCAGAATAAATGACTTGTATTACATCAATAAACAAGTAATACCTGCTTTGCAGCGGGTGTTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTCTTAGAGATGCCCCGTCCTTTAAAGGATGCACGTGTAAAGCATCTCATTGCTCCAAATTCACATCGAACGAGAATTGACTCGTATTATCTGTCAAAACATTGTATACTGTGTGGCGGGTTGGTTCAGGCGTCTGCACACATATGCATTCAGTGCTCTGAAAATGGAGTGGCCGCTGCAACGGCTGTGATTAGTAAAACATCAAAGTTGGAGCAAGAGATGCAGCATCTTGTTGCTATATGTGACCATTGTGGAGGTGGAGGCAGGCTTCTGGAAAGTGATGTAAAGTGCACATCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAACTACTAGCGATGAACCATGTTGCTGCTGGTGAAGGCTTCTATCCGAAATGCATGGTCGAGTGGTTCTGA 6696 0.4131 MADSQCNSKMFSIRIVSIDYYMAQPIPGLDICYSSFHGGKVNEVPVIRIYGSTPAGQKTCLHIHRALPYIYVPCADIPLQSDQEGDVYTYKVSASLEKALKLKGSSGLTRQHVHGCSLVKARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLVGAVLGKSLQPYESHIPFILQFLVDYNLYGMGLLHLLKLKFRHPMPDSSHKKLIFNNQQTGADMDGDACLGPAVWALSMVSSDWMWQLPSELDASSNHEAHCPKRQSTCELEGDASVDEILNQQFKMYSSLSQTRSDVQKVQSLVPIWKEQQERTGIYEDTITPDTGKPLPEVVMRSLSGGLDFEKKFVEMCCEAETCASFISSEELRETDIIGSASPPASLCKDAKLHEEGTEANLRLLTVDEMQSSEIIGTQGKKDADKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDKVLEKANMDYESESQKECQDILDSIDDQLQLESSKRKPPFSSNFNCPVESSSNNMIPQVDGSADDEFASPSSGSEGISFALDKKGESKRSSKHCILQNTRTNTYGKDNRNKVWGTLPLSMTHNNFDHASLHCGHTSEKETVESVDSDCLARNEMENNGIKNGDEGVSDIKGVQTLDNCSVRDLMRRKRCYRVEQADSESEITKKLHLDGDEKLKTDGETEVQKSCVLKMTNHDLVRKKAPFSSDYSEVSSGKKFKVDSTYVQTDNCPQIDMAALGSVQSSSIENIRSVRDNFMYKCPYGSKSSEQHGQMRSCDIVVGANTATDIQVLQCVKSDGKRPRENLGFYETSGIEPSINDIMRDHMRLTSTRASAMAVTDYYICLFIEVKPLDDVIPALLYYQNAGSHLCLLKPKILPPSEGNVGDGYFATREIKCFNNLMQRRSICLNGIQDLVLCLNMSKMLILKKSLHASAVGEMNIIKTSLDGSQDTSQISGPDVKSTPTPLSQIGFCDPAADKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDKVLEKANMDYESESQKECQDILDSIDDQLQLESSKRKPPFSSNFNCPVESSSNNMIPKVDGSADDEFASPSSGSEGISFALDQKDGDEKLKTDGETEVQKSCVLKMTNHDLVCRKAPLVAGSQTGLSLCGPKKFHSTSSSDYSEVSSGKKFKVDSTHVQTDNCPQIDMAALGSVQSSSIENIQSVRDNCMYKCPYGSKSYEQHGQMRSCDIVVGANTATDIQVLQCGKRVLGVAKYYQNDGSHLCLLKPKFLPPSEGNVRRWLLCDERAYFWLILASAFQIKCFNNLMQRRSICLNGIQDLVLCLNMSKMLILKEVSMHQQWRNEYNQNKLGRLADTSQISGPDGKSTPTPLSQIGFCDPARIGCGQQLTVLSIEVLAESRGELLPDPQFDAINIVALGFQNDSDTVVDVLVLLHCKLEPCQRNFVSLSGCKVLVFTDEKHLLKXFINIVSSYDPDILMGWDIQGGSLGFLAERALHLGLGLLNSLSRTPSDSWITSGDTETSKDISATAVPDISSADDVQESSIIEDEWGRTHSSGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKVPSIHNKVLTKWFSGGPGGARYQCVKYITERAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVIVFDFQSXYPSMIIAYNLCFCTCLGKVVASKENTLGVSSFSPEQHVLRDLKDQILLTPNGVMFVPSKVRRGILPHLLEEILSTRVMVKQAMKKLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQGEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFENKDLSEVRSYLQRQWKKILSSKVSIKDFVFAKEVRLGSYSARTSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDVVVDPLEVLALNSPLRINDLYYINKQVIPALQRVFGLVGADLNQWFLEMPRPLKDARVKHLIAPNSHRTRIDSYYLSKHCILCGGLVQASAHICIQCSENGVAAATAVISKTSKLEQEMQHLVAICDHCGGGGRLLESDVKCTSISCSVFYERRKVQKELLAMNHVAAGEGFYPKCMVEWF 2233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4412 2233 CDD POLBc_zeta 1647 2095 - -
Prci1g4412 2233 PRINTS DNA-directed DNA-polymerase family B signature 1808 1820 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci1g4412 2233 PRINTS DNA-directed DNA-polymerase family B signature 1699 1712 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci1g4412 2233 PRINTS DNA-directed DNA-polymerase family B signature 1864 1872 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci1g4412 2233 FunFam DNA polymerase zeta 1766 1825 - -
Prci1g4412 2233 SMART polmehr3 1374 1878 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci1g4412 2233 FunFam DNA polymerase 1383 1682 - -
Prci1g4412 2233 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Prci1g4412 2233 CDD DNA_polB_zeta_exo 1373 1621 - -
Prci1g4412 2233 FunFam DNA polymerase 30 196 - -
Prci1g4412 2233 MobiDBLite consensus disorder prediction 486 536 - -
Prci1g4412 2233 Gene3D Helix hairpin bin 1765 1825 - -
Prci1g4412 2233 Pfam DNA polymerase family B, exonuclease domain 1375 1500 IPR006133 -
Prci1g4412 2233 Pfam DNA polymerase family B, exonuclease domain 55 190 IPR006133 -
Prci1g4412 2233 MobiDBLite consensus disorder prediction 1041 1065 - -
Prci1g4412 2233 SUPERFAMILY DNA/RNA polymerases 1686 2098 IPR043502 -
Prci1g4412 2233 Gene3D - 1941 2104 IPR042087 -
Prci1g4412 2233 MobiDBLite consensus disorder prediction 1040 1100 - -
Prci1g4412 2233 Gene3D - 1401 1682 IPR036397 GO:0003676
Prci1g4412 2233 MobiDBLite consensus disorder prediction 488 530 - -
Prci1g4412 2233 ProSitePatterns DNA polymerase family B signature. 1866 1874 IPR017964 GO:0000166|GO:0003676
Prci1g4412 2233 Gene3D Palm domain of DNA polymerase 1685 1930 IPR023211 -
Prci1g4412 2233 SUPERFAMILY Ribonuclease H-like 36 1646 IPR012337 -
Prci1g4412 2233 Pfam C4-type zinc-finger of DNA polymerase delta 2132 2205 IPR025687 -
Prci1g4412 2233 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 969 IPR030559 GO:0006281|GO:0016035|GO:0019985
Prci1g4412 2233 Pfam DNA polymerase family B 1640 2087 IPR006134 GO:0000166|GO:0003677
Prci1g4412 2233 FunFam DNA polymerase 1941 2109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4412 Prci-Chr1 58083047 58103227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4412 1378 2212 Core DNA Replication Machinery Family AT5G63960 27.995 6.54e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4412 K02350 - gmx:100777934 1486.47