Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4406 ATGTCAGTTCCTTTCATTTCTCTCTTTTATGAGCACGCCCAACAAACCGAAGGCAAAAGCACAATTGCCATATCTTGGAATGAAACTTGTTTGGAAATCTTTCTGCGTGCACTCTCAATATGTCTCGGATCTCCGATCTGGACCAAAAACCTGAAGAAACTCAGATTCATTTATAAAGGAAGGAAATGCTATTCCCACCATAGACTGTCAAGGCGAGATGAATGTGAACCACTATGGAGTATGTGCTTAGGAACATTAGGAATGGAGGACGAGAGACTGTTACCGATTGCAAATGTGGGTAGGATCATGAGGCAAATACTTCCTGCGAGCGCCAAGATCTCAAAAGAAGGGAAGCAGACAATGCAAGAATGTGCGACTGAGTTCATAAGCTTTGTGACAGAGGAAGCTTCTGACAAGTGTCACAGAGAGAATCGCAAGACCGTCAATGGGGATGACATCTGTTGGGCTCTCAGTGCCTTAGGGTTTGATAACTACGCCGAGGCTATTGCCAGGTATTTACATAAATACAGGCAAGCTGAGAGGGACAAAATAATCAATAATCACAAAAGTAAAGCTCATGCCCCACTAACACAACACGTGCTTGAAGACTCTTCGGCAAGAAAATCAAGCTCCCAAGCCGAGAAGCAACGGCCTGAAATTTCTGCTGCATCAGAGAATAGGGTTCCCGAAGACAAGCCTCCTGGACAAATCAATCTCGATGAACTTACTTGA 732 0.4426 MSVPFISLFYEHAQQTEGKSTIAISWNETCLEIFLRALSICLGSPIWTKNLKKLRFIYKGRKCYSHHRLSRRDECEPLWSMCLGTLGMEDERLLPIANVGRIMRQILPASAKISKEGKQTMQECATEFISFVTEEASDKCHRENRKTVNGDDICWALSALGFDNYAEAIARYLHKYRQAERDKIINNHKSKAHAPLTQHVLEDSSARKSSSQAEKQRPEISAASENRVPEDKPPGQINLDELT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4406 243 MobiDBLite consensus disorder prediction 189 243 - -
Prci1g4406 243 Coils Coil 162 182 - -
Prci1g4406 243 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 89 215 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci1g4406 243 PRINTS CCAAT-binding transcription factor subunit A signature 140 158 - -
Prci1g4406 243 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Prci1g4406 243 PRINTS CCAAT-binding transcription factor subunit A signature 159 177 - -
Prci1g4406 243 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 157 IPR003958 -
Prci1g4406 243 MobiDBLite consensus disorder prediction 208 226 - -
Prci1g4406 243 SUPERFAMILY Histone-fold 90 188 IPR009072 GO:0046982
Prci1g4406 243 Gene3D Histone, subunit A 86 228 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4406 Prci-Chr1 58025007 58036855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4406 89 190 CCAAT-HAP3 Transcription Factor Family AT1G09030 74.510 3.25e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci1g4406 CBFD_NFYB_HMF 5e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4406 K08065 - pvy:116118428 185.652