Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g4382 | ATGATGGGAAAAAAAAAAATGAGTGGCCGTTCAAGTCGCACCATCTATGTTGGCAATCTTCCCGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCACGGCCACCTGGTTATGCTTTTGTTGAGTTTGAAGATCCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATACAATTTTGATGGTTTTCGTTTACGAGTTGAGCTGGCACATGGTGGGCGGGGATCTTCATCATCAGCAGACCGCTACAGTAGTTATAGCTCTAGGGGTGGTAGCTATGGAATTTCCAGGCGATCTGACTATCGCGTTATGGTTACTGGGTTACCTACTTCTGCTTCTTGGCAAGACTTGAAGGATCACATGCGCAGAGCTGGTGATGTGTGTTTCTCTCAAGTCTTCCGTGAACGTGGCAGTATGACTGGGATAGTGGATTATACAAACTATGATGATATGAAATATGCTATCCGGAAGCTTGATGACTCAGAATTCCGTAATGCCTTCTCTCGTGCATATATACGGGTGAGGGAATATGATCGGCGAAGTTATTCTAGGAGTCCTAGCCGTGATTCAAGGAGAAGCTATTCTAGAAGTCGCAGCCCTTACATGACGCGAAGTCAAAGTCCTAGCTACAGTGACAGGAGCCAAAGCTTGTCTGCACGAGCAAAACGTTCACGACGATCATTATCAAGATCTCGGTCAAGATCTAGATCACCAAATTCATCTTCTCCACCTCACAAGAGTCGCAGTCCTAGCCGAAGTCCTAGAAGCATTTCAAAATCTCGTTCACCTTCAGTGAGATCTGAGCGTAGCAGATCTGTTGAATCCGGAGATCGTTGA | 885 | 0.4486 | MMGKKKMSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGRGSSSSADRYSSYSSRGGSYGISRRSDYRVMVTGLPTSASWQDLKDHMRRAGDVCFSQVFRERGSMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSRSPYMTRSQSPSYSDRSQSLSARAKRSRRSLSRSRSRSRSPNSSSPPHKSRSPSRSPRSISKSRSPSVRSERSRSVESGDR | 294 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g4382 | 294 | MobiDBLite | consensus disorder prediction | 278 | 294 | - | - | |
| Prci1g4382 | 294 | MobiDBLite | consensus disorder prediction | 194 | 294 | - | - | |
| Prci1g4382 | 294 | CDD | RRM1_SF2_plant_like | 14 | 85 | - | - | |
| Prci1g4382 | 294 | SMART | rrm1_1 | 118 | 187 | IPR000504 | GO:0003723 | |
| Prci1g4382 | 294 | SMART | rrm1_1 | 14 | 84 | IPR000504 | GO:0003723 | |
| Prci1g4382 | 294 | MobiDBLite | consensus disorder prediction | 249 | 277 | - | - | |
| Prci1g4382 | 294 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 88 | IPR000504 | GO:0003723 | |
| Prci1g4382 | 294 | MobiDBLite | consensus disorder prediction | 194 | 211 | - | - | |
| Prci1g4382 | 294 | Gene3D | - | 116 | 194 | IPR012677 | - | |
| Prci1g4382 | 294 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 7 | 116 | - | - | |
| Prci1g4382 | 294 | Gene3D | - | 3 | 115 | IPR012677 | - | |
| Prci1g4382 | 294 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 6 | 277 | - | - | |
| Prci1g4382 | 294 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 195 | IPR000504 | GO:0003723 | |
| Prci1g4382 | 294 | MobiDBLite | consensus disorder prediction | 212 | 233 | - | - | |
| Prci1g4382 | 294 | SUPERFAMILY | RNA-binding domain, RBD | 11 | 184 | IPR035979 | GO:0003676 | |
| Prci1g4382 | 294 | CDD | RRM2_SF2_plant_like | 117 | 192 | - | - | |
| Prci1g4382 | 294 | FunFam | serine/arginine-rich splicing factor SR34A-like | 117 | 194 | - | - | |
| Prci1g4382 | 294 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 181 | IPR000504 | GO:0003723 | |
| Prci1g4382 | 294 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 82 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g4382 | Prci-Chr1 | 57865555 | 57871537 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g4382 | 14 | 86 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 32.895 | 6.68e-06 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g4382 | K12890 | - | zju:107411848 | 325.479 |