Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4367 ATGGCTGATCGAGAAGCTACACTGAGAATAAGAAGACTCGCTATCATCGGCGTGTCTAGTTTCTTGCTGGTGGCCATGGCGGTGGCCGTCACCCTAGGTGTCAGCATGAATCAAAGCGATTCTGAATCAAGCCAACCAAAAGATAACAACAAGTCCCATGTCTCAGATTCAATGAAAGCTGTGACAGACCTTTGTCGTCCCACCGACTACAAAAAAGAGTGTGAGGACAGTATCAAATTTGAGGCCGGCAACACCAGCGACCCCAAAGAACTCATCAAGATCGCCTTCAACGTCACCATTCGCTCCGTCGGCGAGAGTCTCCAGAAAACCCGTCTCATGCATGACATTGAGAAAGAGCCCAGATCCAAGATGGCGCTCGACTCCTGCATGCACCTGATGGCCCTCTCTATCGGTGAGTTCCGAAAGTCCGTCCAAAACATGGGCTCCTTTGATCTCACCGACGTTGGCGACATGCTTATGAACCTCAAGGTTTGGATCAGCGGTGCCATCACCTACCAACAGACTTGTCTGGACGGATTTCAGAACACCACCAGCCCGGCAGGGAAACAGATGCAAGATGTCTTAAAACTTACCATGAAACACAGCAGCAATATTCTCGCCATCATCAATGACTTCGCCAACAGTCTCGCTCAGCTGAACATAACAAGCTCCACCTCACGTCGACTCCTTCAAGATTTTAAAGCCCATCCCATTTTATGCCATGGAGACTTCGACATTCCCCTCTGGGCACAAGCCGGTATGAGAAGACTTCTTGCTACCGGCAAGCTCAAGCCCAACGTGGTTGTGGCCAAGGATGGGACTGGAAAGGTCAGCAGCATCAACGAAGCCTTGAGAATGGTCCCCACGAATAATGTGAAGCCATTCGTCATCTACGTGAAGGAAGGAGTCTACCACGAGTATGTTCACATCATGACCAATATGACCCGTATCATCATGATCGGAGATGGAGGTGAGAAGACCCGAATTACCGGTAACAGAAACTTTGTCGACGGCATTGGCACCTTCAGAACCGCCACTGTTGCCGTTGACGGAGATTTCTTTGTTGCTATAAAGATGGGGTTCGAGAACTCCGCTGGTCCCGAGAAGCATCAAGCCGTGGCCCTGAGAGTGCAAGGTGACATGGCAGTGTTCTACAAATGCACCATGGACGGCTACCAGGACACGCTTTACGTGCACGCCATGCGTCAGTTCTATAGGGACTGCACTATCTCAGGCACGGTGGACTTTGTTTTTGGTGATGCAGTGTCGGTGTTCCAGAATTGCACATTTGTGGTGCGGAAGCCATTGGAGGAACAACAATGTATCGTGACGGCACAGGGCAGGAAGGAGAGGCACCAGCCTACGGGAATAGTGATCCAAGGAGGGTCGATCGTAGCAGATCCTGACTTCTACCAAGATAGGTTCAAGAACAAGGCTTACTTGGCTCGTCCATGGAAGATATACTCGAGAACCATATTCATGGACAGCTTTGTGGATGACTTGATCCAGCCCGAAGGGTTTTTGCCGTGGGCGGGCACACTGGGACTGGACACGTGCTATTATGCAGAGTATAATAACCGCGGCCCAGGTTCAGATAAATCGAAGCGTGCAAAATGGGGCGGCATCAAGAACATGACACCCCAGCAAGCAAACGCTTATACACCTGTCAACTTCTTCAAGGGGGACAAGTGGATTAAGATTTCTCGGATTCCTTACACCCCTGCCTCTTGGAACTCCAAACATTGA 1746 0.5034 MADREATLRIRRLAIIGVSSFLLVAMAVAVTLGVSMNQSDSESSQPKDNNKSHVSDSMKAVTDLCRPTDYKKECEDSIKFEAGNTSDPKELIKIAFNVTIRSVGESLQKTRLMHDIEKEPRSKMALDSCMHLMALSIGEFRKSVQNMGSFDLTDVGDMLMNLKVWISGAITYQQTCLDGFQNTTSPAGKQMQDVLKLTMKHSSNILAIINDFANSLAQLNITSSTSRRLLQDFKAHPILCHGDFDIPLWAQAGMRRLLATGKLKPNVVVAKDGTGKVSSINEALRMVPTNNVKPFVIYVKEGVYHEYVHIMTNMTRIIMIGDGGEKTRITGNRNFVDGIGTFRTATVAVDGDFFVAIKMGFENSAGPEKHQAVALRVQGDMAVFYKCTMDGYQDTLYVHAMRQFYRDCTISGTVDFVFGDAVSVFQNCTFVVRKPLEEQQCIVTAQGRKERHQPTGIVIQGGSIVADPDFYQDRFKNKAYLARPWKIYSRTIFMDSFVDDLIQPEGFLPWAGTLGLDTCYYAEYNNRGPGSDKSKRAKWGGIKNMTPQQANAYTPVNFFKGDKWIKISRIPYTPASWNSKH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4367 581 FunFam Pectinesterase 260 576 - -
Prci1g4367 581 Pfam Pectinesterase 266 562 IPR000070 GO:0030599|GO:0042545
Prci1g4367 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Prci1g4367 581 SMART PMEI_2 56 208 IPR006501 GO:0004857
Prci1g4367 581 MobiDBLite consensus disorder prediction 37 58 - -
Prci1g4367 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 212 IPR035513 -
Prci1g4367 581 SUPERFAMILY Pectin lyase-like 264 573 IPR011050 -
Prci1g4367 581 FunFam Pectinesterase 57 213 - -
Prci1g4367 581 Gene3D - 260 575 IPR012334 -
Prci1g4367 581 NCBIfam pectinesterase inhibitor domain 30 210 IPR006501 GO:0004857
Prci1g4367 581 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Prci1g4367 581 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Prci1g4367 581 PANTHER PECTINESTERASE 18 566 - -
Prci1g4367 581 CDD PMEI-like_3 64 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4367 Prci-Chr1 57771125 57773385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4367 9 573 Carbohydrate Esterase AT3G05610 46.046 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4367 K01051 - gmx:100801686 722.62