Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4351 ATGTCAGAAGCACTGCCGACTTCCCGGTCGTTGAGGCAACGCGGCGATCCTTATTGGATATTTGAAGAATTGCCAAAGGCCACCATTGTTTCTGTTTCCAGACCAGACACCGGAGATATTAGTCCAATCCTTCTGTCTTATACCATTGAGTTGGAGTACAAACAGTTCAAATGGCGCTTAATGAAGAAAGCCTCACAAGTTCTCTACTTACATTTCGCTTTGAAGAAGCGTGCATTAATTAAAGAATTTCATGACAAGCAAGAGCAGGTAAAAGAATGGCTGCAAAGCTTAGGAATAGTTGATCAAACAGCAATGGTGCAAGATACTGAAGAACCTGACGACGGGGCTGTGCCTTTGCATAATGAAGACAGATATAGGAACAGATATGTTCCATCCGCTGCAGCCCTACCAATCATTCGTCCATCACTAGGAGGGCAGCAGTCAGTAGCAGATAAAGCAAAAGTCGCAATGCAGGGTTACTTGAATCATTTCCTTGGAAACTTGGATATTATCAATTCTCGAGAGGTCTGCAAGTTCTTGGAGGTCTCTAGGTTATCCTTTTTACAGGATTATGGATCAAAAATGAAAGAGGGCTATGTAATGGTGAAGCGCTTATCAAATATCTCAAGGGATTCAGATGTAGCATGCTTTCCATGTGAATTGCTGGGTTTATGTAATAACAACTGGTCCAAGGTGTGGGCTGTCCTGAAACCTGGCTTTTTGGCCTTGCTGGATGATCCTTTCAGCGACAAACCGGTAGAGATAATTGTTTTTGATATCCTCCCTTCGTCAAGTGAAGATAAGGATTCCCTTGTACATTTGGCTGATCATATCAAGGATCGCAATCCCTTAAGATTCACATTTGAGGTAACTAGCGGAAATCGGAGCATAAGGTTGAGAACTAGCAGCAGTGCCAAAGTTAAAGATTGGGTTACTAAAATTAACGAAGCTGGTCTTAGACCTCAAGAGAGTTGGTGCCGTCCTCATCGCTTTGGTTCATTTGCTCCCATAAGAGGTTTGACTGAAGATGGAAGCCAAGCCCAGTGGTTTATAGATGGGAAGGCAGCATTTGAAGCAATTGCTTCCTCAATTCAGGAAGCAAAGTCAGAGATCCTTATCACCGGATGGTGGCTTTGCCCAGAGCTTTATCTGAAACGTCCATTTCACTCTCATTCTTCCTTTAGGCTGGACGCATTACTAGAAGAAAAGGCTAAACAAGGAGTTAAGATCTACGTGCTTCTGTACAAGGAGGTCTCTTTAGCTCTAAAAATTAACAGCTTGTACAGTAAGAGAAGACTTCTCAACATTCATGAAAATGTGAGAGTACTGCGGTATCCCAACCATTTATCGGCTGGTGTCTATTTATGGTCGCATCATGAAAAACTTGTAATCGTTGATTACAAGGTTTGCTATTTTGGAGGACTAGATTTATGCTTTGGCCGTTATGACACAACTGAACATAAAGTGGGTGATTTCCCCTCCGACATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCTAATTCATGGGAAGACACCATGAGAGATGAACTGGATCGTGAAAAGTATCCCCGCATGCCGTGGCACGATGTCCATTGTGCTATCTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATACCATTCCACTTCTTATGCCTCACCACCACATGGTCATCCCACACTACATGGGAAGAAGCAAAGAGGCAGATATCGATGGCTGCAAAGATGATGACGACAAGAAAGAAGTTGAAAGTCAGAATTCCTCTTCGTCACAATCACCCCCGCAAGATATACCATTGCTTCTGCCTCAAGAAGCTGGTGGAGAAGATCTTGAGTTAATTGGGAACAATATGAATTATAATCTCATGGATCAGACAAATTTTTGCGAAAGCCGAAATCCACGCGACAAAACTTCAGATGCTCAGGTGGGAGGTTTTCTAAATGAATTTGATCCTTTTAACTCGGAGAGACAATCTCCCATGGACGCTTCAGATGAATGGTGGGAAACAGCTGAAGAAGGTTGCCGCGACGCCACTGCTAAGGAATATGGAGAAGTTGGTCCTCGTACAAAATGTCGTTCCCAGGTAATCAGGAGTGTCAGCCATTGGTCTGCTGGAACAGGTCAGACTGAAGAAAGCATTCACACTGCTTATTGTTCTCTCATTGAAAAAGCAAAATATTTTATCTACTTTGAGAACCAGTTTTTCATATCAGGCCTGGCATCAGATGACACCATACAGAACCGTATATTGGAAGCATTATATTGGCGTATTTTACTGGCTCACAAAGAGCAAAAACTTTTTAGGGTTATAATTGTGATGCCTCTATTGGCGGGCTTCCAGGGCGGTCTGGATGATGGTGGTGCGGCAACTGTGAGAGCCATAACACATTGGCAGTATCGAACAATCTCTAGAGAAAAACACTCCATATTAGCCAACCTTAGAGCTATGCTTGGTCCTAAGACTGAAGATTACATTTCTTTCTACGGTCTGCGTTCTCATGGTAGACTTTTTGCTGGTGGCCCTGTGGTTACTAGTCAGGTCTATGTACACAGCAAATTGATGATTGTAGATGATCGTGCTGCTATAATTGGATCTTCTAATATAAATGATAGGAGTTTGCTAGGTTCAAGAGACTCTGAGATTGGAGTTGTAATTGAAGACAAAGAATATGTCGATTCATCTATGAATGGAAAATCGTGGAAGGCTGGGAAATTTTCCTATAGCCTCCGTTGCTCCTTATGGTCTGAGCACCTTGGTCTGAATACTGGAGAGGTCGGTAAAATCAGTGATCCAATAGCCGATACAACTTATAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTTTCCTGCATACCCAATGATCACATACACTCCAGAGCTGCACTTAGGCAAAAGATGGCTCACTTGAAGGAGAAACTCGGTCATACCACCATAGACTTGGGAATAGGCCCTGATCAGACAGAGCACGCTGGCAGACTGAAGTGTATAAAGGGGCATCTTGTTTGTTTTCCTTTGGAATTCATGCGTGAAGAAGATTTAAGACCAGTTTTCAATGAGAGTGAGTTTTATGTATCTCCTCATGTATATCATTAA 3180 0.4289 MSEALPTSRSLRQRGDPYWIFEELPKATIVSVSRPDTGDISPILLSYTIELEYKQFKWRLMKKASQVLYLHFALKKRALIKEFHDKQEQVKEWLQSLGIVDQTAMVQDTEEPDDGAVPLHNEDRYRNRYVPSAAALPIIRPSLGGQQSVADKAKVAMQGYLNHFLGNLDIINSREVCKFLEVSRLSFLQDYGSKMKEGYVMVKRLSNISRDSDVACFPCELLGLCNNNWSKVWAVLKPGFLALLDDPFSDKPVEIIVFDILPSSSEDKDSLVHLADHIKDRNPLRFTFEVTSGNRSIRLRTSSSAKVKDWVTKINEAGLRPQESWCRPHRFGSFAPIRGLTEDGSQAQWFIDGKAAFEAIASSIQEAKSEILITGWWLCPELYLKRPFHSHSSFRLDALLEEKAKQGVKIYVLLYKEVSLALKINSLYSKRRLLNIHENVRVLRYPNHLSAGVYLWSHHEKLVIVDYKVCYFGGLDLCFGRYDTTEHKVGDFPSDIWPGKDYYNPRESEPNSWEDTMRDELDREKYPRMPWHDVHCAIWGPPCRDIARHFVQRWNHAKRTKAPNEHTIPLLMPHHHMVIPHYMGRSKEADIDGCKDDDDKKEVESQNSSSSQSPPQDIPLLLPQEAGGEDLELIGNNMNYNLMDQTNFCESRNPRDKTSDAQVGGFLNEFDPFNSERQSPMDASDEWWETAEEGCRDATAKEYGEVGPRTKCRSQVIRSVSHWSAGTGQTEESIHTAYCSLIEKAKYFIYFENQFFISGLASDDTIQNRILEALYWRILLAHKEQKLFRVIIVMPLLAGFQGGLDDGGAATVRAITHWQYRTISREKHSILANLRAMLGPKTEDYISFYGLRSHGRLFAGGPVVTSQVYVHSKLMIVDDRAAIIGSSNINDRSLLGSRDSEIGVVIEDKEYVDSSMNGKSWKAGKFSYSLRCSLWSEHLGLNTGEVGKISDPIADTTYKDLWSATAKENTRIYHEVFSCIPNDHIHSRAALRQKMAHLKEKLGHTTIDLGIGPDQTEHAGRLKCIKGHLVCFPLEFMREEDLRPVFNESEFYVSPHVYH 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4351 1059 CDD PH_PLD 172 317 - -
Prci1g4351 1059 SMART PH_update 194 321 IPR001849 -
Prci1g4351 1059 CDD PLDc_vPLD1_2_yPLD_like_2 726 910 - -
Prci1g4351 1059 FunFam Phospholipase 700 920 - -
Prci1g4351 1059 ProSiteProfiles PH domain profile. 193 319 IPR001849 -
Prci1g4351 1059 PANTHER PHOSPHOLIPASE D 151 1045 IPR015679 -
Prci1g4351 1059 MobiDBLite consensus disorder prediction 588 622 - -
Prci1g4351 1059 CDD PLDc_vPLD1_2_yPLD_like_1 347 491 - -
Prci1g4351 1059 Gene3D Endonuclease Chain A 687 930 - -
Prci1g4351 1059 SMART pld_4 866 893 IPR001736 GO:0003824
Prci1g4351 1059 SMART pld_4 454 481 IPR001736 GO:0003824
Prci1g4351 1059 MobiDBLite consensus disorder prediction 588 605 - -
Prci1g4351 1059 Pfam Phospholipase D Active site motif 454 481 IPR001736 GO:0003824
Prci1g4351 1059 Gene3D - 189 324 IPR011993 -
Prci1g4351 1059 SUPERFAMILY Phospholipase D/nuclease 708 913 - -
Prci1g4351 1059 PIRSF PLD_euk 26 613 IPR016555 GO:0004630|GO:0006654|GO:0048017
Prci1g4351 1059 PIRSF PLD_euk 657 1059 IPR016555 GO:0004630|GO:0006654|GO:0048017
Prci1g4351 1059 Gene3D Endonuclease Chain A 341 579 - -
Prci1g4351 1059 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 454 481 IPR001736 GO:0003824
Prci1g4351 1059 Pfam PLD-like domain 740 912 IPR025202 -
Prci1g4351 1059 SUPERFAMILY PH domain-like 188 322 - -
Prci1g4351 1059 Pfam PH domain 195 317 IPR001849 -
Prci1g4351 1059 SUPERFAMILY Phospholipase D/nuclease 308 574 - -
Prci1g4351 1059 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 866 893 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4351 Prci-Chr1 57703151 57710803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4351 20 1059 Phospholipase D Gene Family (Wang group) AT3G05630 66.604 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4351 K01115 - gmx:100796914 1663.28