Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4336 ATGGTAAGGGGGGGAAAGGTTGGTGGCAAACGCAATTTCAGAAAAAGGGATCGGTCAAAGGAAGGGGTTTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGAAGATAGAGATTTGTCTGATGGTTCAGAGGATTCATTGTATTCTTTAGATGGATGTGAATCCGAGGAGAGTTTAGATAGCTTTGTAGGGGATGAGGATGAGGAAATTGAAGTGAGGAGGAAATTCAATAGATCCAAGACAAAAAATGGCATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAGCACAGAGGAAGGATAACTTATTCACATCAGCTAGAAGAAGAAAAAGAAGAAGACAAAGAAGAAGAAGAACGTGAACAAGAGGAGGTAGATGATGAAGAGACAGATGAATATGAGGAAGATGATGCTGATGAAGATTTTGATTGTGATGATGATGAGGAATTTACAGCTGAGGAAGAAGATTACTCGGATGAGGAAGAAATAAAGGGGAGAAAGAAGAAAAGTGATGGCATAAAAATGGGCAAGAAAGTTGTGCAGAAGCGGGCCTCTGTAGCTTATACTAGAGGTCGTAAAAGAAGAAAGAATTCTAGAGCTGCAAAGCCTTTGAGAAAGAAGAGAAGAAAGAATGGAGGCTTGAGGAGGAAAACAAAGTATGATGATGAGGGTGATTTTGTAGATAATGGTCCTGCCATCAGAACCAAGAGTAAGAAAAAAACAGGACGAAAAAGGAGAAGACTAATAATAGATTCAGATTCACACTCAGATTGCGTGTCATCTAGATCGTCTGAATATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGTTTGAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGACTCCATGAAGATCTACATCAGCAAAGAAAGCCTCCAGCCCGGAAAGGAAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAGCCAGGAAAGCAGGTGTGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACCCACTTCTTTTGTTTTGCTTGCATTATGGAATGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTACATTGATCCTTATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGACGATGACCTCATGTTACTCTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGGGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTATGGGATCTTCAAGTTCTCAAGTTCAGGAAGGTGCGGCAGATTCAAGGGCAACAACAGTTCAGAGCCTACCTGGTAGACCATCACCTGCTGTACATGCAAGAGAAGTTATTGACCTCAACTTGATGTCTTCACCCCGTGCAGCCTTTAGTCAAGGATTCGGGAATCTTTCTTCTAGATTTTCCGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCTCCAACTTTATCTGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTTCAACTGGTCGATCTAATGGCATTTCAGCTACCAATTCAACTAGTAACCTATATGGCCCTCAAAGTGATCAAAGTAGGGTTACAACCACTCATGACGCAAGGACGCAGAACGTGGGAACATCATATCACTCATTTTTTGAGGAAAGATTATGCCACAGTACCTCTCCACTAATGCAGAATGGGGATCATTTCTCTATGAGAGTAAGCAATTCAAGAAGGCCAGCGGTTCAAGATTCAGCTCCATTTACCAACAGAACTGTGAATGGGGGATTTTGGCCCGGTCTTGTGGTGACACATCCTGTATCAGATTATGAACAAGGCCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGTAGCATGTCCCCTGCTATTAGAGAAGAGAGTAACTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCACCTTATGGGCCTGTCACAAAACATTGATTTAGGCAACAGTACGATCAAGGACATTGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCGTGTCCCCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCCTCTTGCTTTGATTCTTTTGTAGGAGGCGTGGTTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTTGGCCTTTAG 2499 0.4326 MVRGGKVGGKRNFRKRDRSKEGVSDDSDEDYVVSDEDRDLSDGSEDSLYSLDGCESEESLDSFVGDEDEEIEVRRKFNRSKTKNGICGRQKIGRKPSQHRGRITYSHQLEEEKEEDKEEEEREQEEVDDEETDEYEEDDADEDFDCDDDEEFTAEEEDYSDEEEIKGRKKKSDGIKMGKKVVQKRASVAYTRGRKRRKNSRAAKPLRKKRRKNGGLRRKTKYDDEGDFVDNGPAIRTKSKKKTGRKRRRLIIDSDSHSDCVSSRSSEYEYTISEEEREQVREAEELCGSLRTNLRSSSLLTKNEEDGLHEDLHQQRKPPARKGKEKIEEHQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVAMGSSSSQVQEGAADSRATTVQSLPGRPSPAVHAREVIDLNLMSSPRAAFSQGFGNLSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSSTGRSNGISATNSTSNLYGPQSDQSRVTTTHDARTQNVGTSYHSFFEERLCHSTSPLMQNGDHFSMRVSNSRRPAVQDSAPFTNRTVNGGFWPGLVVTHPVSDYEQGHQLSSSSHIVADGSMSPAIREESNFHIVKEQLSSLVKRHLMGLSQNIDLGNSTIKDIARISLNTILAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGGVVKRIMDTRMSQWLRLGL 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4336 832 ProSiteProfiles Zinc finger RING-type profile. 351 393 IPR001841 -
Prci1g4336 832 MobiDBLite consensus disorder prediction 1 276 - -
Prci1g4336 832 SMART ring_2 351 392 IPR001841 -
Prci1g4336 832 ProSiteProfiles Zinc finger PHD-type profile. 442 491 IPR019787 -
Prci1g4336 832 MobiDBLite consensus disorder prediction 590 623 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 113 161 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 302 341 - -
Prci1g4336 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 411 IPR013083 -
Prci1g4336 832 MobiDBLite consensus disorder prediction 298 341 - -
Prci1g4336 832 Pfam Ring finger domain 350 393 IPR001841 -
Prci1g4336 832 Pfam PHD-finger 444 490 IPR019787 -
Prci1g4336 832 SUPERFAMILY RING/U-box 350 399 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 553 573 - -
Prci1g4336 832 SMART PHD_3 444 489 IPR001965 -
Prci1g4336 832 CDD RING-HC_Topors 349 396 - -
Prci1g4336 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 514 IPR013083 -
Prci1g4336 832 MobiDBLite consensus disorder prediction 189 216 - -
Prci1g4336 832 Coils Coil 106 133 - -
Prci1g4336 832 SUPERFAMILY FYVE/PHD zinc finger 414 490 IPR011011 -
Prci1g4336 832 ProSitePatterns Zinc finger RING-type signature. 370 379 IPR017907 -
Prci1g4336 832 Coils Coil 273 293 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 28 42 - -
Prci1g4336 832 PANTHER F18C1.6 PROTEIN 1 823 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 217 237 - -
Prci1g4336 832 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4336 Prci-Chr1 57614547 57618494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4336 439 488 C2H2 Transcription Factor Family AT3G01460 48.077 4.56e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g4336 PHD 5.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4336 - - gmx:100791422 924.85