Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4332 ATGATCACGATGGATCTCCAGGAAAAGGACACGTCTTATAAGGAATTGATGGATAACAAGAAGTGCTGCACTGATTGCAAAACCACTAAGACCCCACTCTGGAGAGGGGGACCTGCTGGGCCCAAGACCCTGTGCAATGCTTGCGGGATAAGATACAGGAAGAGAAGGGTTTCAACAGTGGGATTGAGATTGAACAAAGGACGGGAAAAGAAGAGGGAGAAAACACAGAGTCGGGTTGGTGGTGAAGCTGTTGGTGATGATGGGGATGATTTGAAGGAGCTTGTGAAGATGAAGCTGATGGCATTAGGCGAGGAAGTTTTGCTGCAACGGTCAAATTCTGTGGTGAAGAAACAGAGGTGGCAGAGGAGGAGGAGGGAGTTAGGGGAAGTGGAACAAGCTGCCTTCTGCTTGATGGCCCTGTCTTGTGGATCTGTTTTTGCTTAA 444 0.4865 MITMDLQEKDTSYKELMDNKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRVSTVGLRLNKGREKKREKTQSRVGGEAVGDDGDDLKELVKMKLMALGEEVLLQRSNSVVKKQRWQRRRRELGEVEQAAFCLMALSCGSVFA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4332 147 SMART GATA_3 17 69 IPR000679 GO:0006355|GO:0043565
Prci1g4332 147 Gene3D - 18 80 IPR013088 GO:0006355|GO:0008270
Prci1g4332 147 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Prci1g4332 147 CDD ZnF_GATA 23 76 IPR000679 GO:0006355|GO:0043565
Prci1g4332 147 PANTHER OS01G0976800 PROTEIN 9 146 - -
Prci1g4332 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 58 - -
Prci1g4332 147 MobiDBLite consensus disorder prediction 66 85 - -
Prci1g4332 147 ProSiteProfiles GATA-type zinc finger domain profile. 23 53 IPR000679 GO:0006355|GO:0043565
Prci1g4332 147 Pfam GATA zinc finger 23 57 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4332 Prci-Chr1 57585902 57587752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4332 16 147 C2C2-Gata Transcription Factor Family AT3G06740 47.368 1.70e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci1g4332 GATA 1.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4332 - - qsa:O6P43_011056 184.882