Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4311 ATGGACCATGCCTACAGGTTAAACACCAAGGAATCTCCCCGTTCTGGAGATGTCAGAGTTGGTGACGTCTCTTCGTCTTCAGATCAGTTGCATCGTGGTCCGGTAGCCAATACGCACGTACGGCAGGAAGTGCCTGATGATTCGGAAAGAACCGTGTCTGACGTGCCGGATCAGTTCATCAAGACCCAAATTGCCAGTCATCCTCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCCCTCCTGGAAGAAATGAACCGTGAAAATCACCCCAGCAGTGCTCAGCGTCAGATAGGGGACGATCCTCAACTTGACGATTTCATGGAATCCTACTGCGAAGTTCTTGGTAGATACAAAGACGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATATCGAGTCCCAGCTCCGCAACCTTTGCAAGGGAACATTGACAAATTCAACGGGATGTCGATCCGAGGAGGCAGGTGTGACTTCAGAAGAGGAACTGGGTTGTGGTGAGGTTGAAGCTGTTGAAGGTGACGGATCTTGTGGCAGTTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGTAAGTACAGTGGCTATCTTAGCAATCTGCGGAAGGAGTTCTTAAAGAAAAGGAAAAGCGGCAAGCTTCCAAAAGATGCAAGGATGACGCTACTCAATTGGTGGAACACCCATTACAGATGGCCTTATCCCACGGAGGAGGAGAAAGTGAGGCTATCGGAAATGAGTGGACTGAGTCAAAAGCAGATCAATAACTGGTTTATCAATCAGAGGAAACGGCACTGGAAGCCATCTGATGATATGCGAATTGCCGTGTTGGAGGGTGTAAGTGGGGCTGCCTTTGGACCCCCTTTCTGCTATTCTGCTCCTCCGCCTCCGCCTCATTGA 945 0.4878 MDHAYRLNTKESPRSGDVRVGDVSSSSDQLHRGPVANTHVRQEVPDDSERTVSDVPDQFIKTQIASHPLYPNLLSAYIECQKVGAPPELASLLEEMNRENHPSSAQRQIGDDPQLDDFMESYCEVLGRYKDELSRPFNEATLFLSNIESQLRNLCKGTLTNSTGCRSEEAGVTSEEELGCGEVEAVEGDGSCGSCQADKEIKEMLLRKYSGYLSNLRKEFLKKRKSGKLPKDARMTLLNWWNTHYRWPYPTEEEKVRLSEMSGLSQKQINNWFINQRKRHWKPSDDMRIAVLEGVSGAAFGPPFCYSAPPPPPH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4311 314 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Prci1g4311 314 MobiDBLite consensus disorder prediction 1 52 - -
Prci1g4311 314 MobiDBLite consensus disorder prediction 1 17 - -
Prci1g4311 314 CDD homeodomain 223 284 IPR001356 GO:0003677
Prci1g4311 314 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Prci1g4311 314 Pfam KNOX2 domain 108 155 IPR005541 GO:0003677|GO:0005634
Prci1g4311 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 288 - -
Prci1g4311 314 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Prci1g4311 314 SMART HOX_1 222 287 IPR001356 GO:0003677
Prci1g4311 314 MobiDBLite consensus disorder prediction 19 33 - -
Prci1g4311 314 Gene3D - 218 290 - -
Prci1g4311 314 SMART ELK_2 200 221 IPR005539 GO:0003677
Prci1g4311 314 SUPERFAMILY Homeodomain-like 222 288 IPR009057 -
Prci1g4311 314 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Prci1g4311 314 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Prci1g4311 314 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Prci1g4311 314 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Prci1g4311 314 Pfam ELK domain 200 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4311 Prci-Chr1 57458948 57463545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4311 15 300 Homeobox Transcription Factor Family AT1G23380 49.492 1.96e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci1g4311 KNOX2 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4311 - - qsa:O6P43_011033 401.364