Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4310 ATGGACCATGCCTACAGGTTAAACACCAAGGAATCTCCCCGTTCTGGAGATGTCAGAGTTGGTGACGTCTCTTCGTCTTCAGATCAGTTGCATCGTGGTCCGGTAGCCAATACGCACGTACGGCAGGAAGTGCCTGATGATTCGGAAAGAACCGTGTCTGACGTGCCGGATCAGTTCATCAAGACCCAAATTGCCAGTCATCCTCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCCCTCCTGGAAGAAATGAACCGTGAAAATCACCCCAGCAGTGCTCAGCGTCAGATAGGGGACGATCCTCAACTTGACGATTTCATGGAATCCTACTGCGAAGTTCTTGGTAGATACAAAGACGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATATCGAGTCCCAGCTCCGCAACCTTTGCAAGGGAACATTGACAAATTCAACGGGATGTCGATCCGGTGTGACTTCAGAAGAGGAACTGGGTTGTGGTGAGGTTGAAGCTGTTGAAGGTGACGGATCTTGTGGCAGTTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGTAAGTACAGTGGCTATCTTAGCAATCTGCGGAAGGAGTTCTTAAAGAAAAGGAAAAGCGGCAAGCTTCCAAAAGATGCAAGGATGACGCTACTCAATTGGTGGAACACCCATTACAGATGGCCTTATCCCACGGAGGAGGAGAAAGTGAGGCTATCGGAAATGAGTGGACTGAGTCAAAAGCAGATCAATAACTGGTTTATCAATCAGAGGAAACGGCACTGGAAGCCATCTGATGATATGCGAATTGCCGTGTTGGAGGGTGTAAGTGGGGCTGCCTTTGGACCCCCTTTCTGCTATTCTGCTCCTCCGCCTCCGCCTCATTGA 936 0.4861 MDHAYRLNTKESPRSGDVRVGDVSSSSDQLHRGPVANTHVRQEVPDDSERTVSDVPDQFIKTQIASHPLYPNLLSAYIECQKVGAPPELASLLEEMNRENHPSSAQRQIGDDPQLDDFMESYCEVLGRYKDELSRPFNEATLFLSNIESQLRNLCKGTLTNSTGCRSGVTSEEELGCGEVEAVEGDGSCGSCQADKEIKEMLLRKYSGYLSNLRKEFLKKRKSGKLPKDARMTLLNWWNTHYRWPYPTEEEKVRLSEMSGLSQKQINNWFINQRKRHWKPSDDMRIAVLEGVSGAAFGPPFCYSAPPPPPH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4310 311 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Prci1g4310 311 MobiDBLite consensus disorder prediction 1 52 - -
Prci1g4310 311 MobiDBLite consensus disorder prediction 1 17 - -
Prci1g4310 311 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Prci1g4310 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 285 - -
Prci1g4310 311 SMART HOX_1 219 284 IPR001356 GO:0003677
Prci1g4310 311 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Prci1g4310 311 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Prci1g4310 311 SMART ELK_2 197 218 IPR005539 GO:0003677
Prci1g4310 311 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Prci1g4310 311 MobiDBLite consensus disorder prediction 19 33 - -
Prci1g4310 311 Pfam ELK domain 197 218 IPR005539 GO:0003677
Prci1g4310 311 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Prci1g4310 311 Gene3D - 215 287 - -
Prci1g4310 311 CDD homeodomain 220 281 IPR001356 GO:0003677
Prci1g4310 311 Pfam KNOX2 domain 108 155 IPR005541 GO:0003677|GO:0005634
Prci1g4310 311 SUPERFAMILY Homeodomain-like 219 285 IPR009057 -
Prci1g4310 311 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4310 Prci-Chr1 57458940 57463545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4310 15 297 Homeobox Transcription Factor Family AT1G23380 49.488 1.27e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci1g4310 KNOX2 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4310 - - gmx:102660463 393.275