Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4300 ATGGCGTCTTTGCAGCCCGACTTAGATTCTATCCATTCTGATACGTCGCCACCATCCAGTCTTAGAAAGCGCACCAAATTTGGGCCCGATTCTAGCCGTCACAATTCCCTCCACCCCGTTCGATGGAGATCCGACGCGGACCGTCGGATCTACTCCTCCAAGCTTGTCGAAGCTCTGCGCCACGTCCTCCATCGCAGTCCTTCTCTCCCGCCCAGACCTGTCGGCGGTCATGAAATTCATGAGACGGCTGACAGAGTTCTAGCCACGACGGCCAAGGGCAGGACTCGATGGAGTCGAGCGATTCTGGCTTCTCCGCTCGGCCGTTGGAGATTCCAGAGGCAACACAAGAAGGTGAAGAAGACGACGAGAGGATTCAAGAAGCCGGAAATTAGGAAAGACAGGAGGTTGCCGGCTCTGCATAAGAAAGCGTGCGTTCTCGGCCGATTAGTTCCCGGTTGCCGTAAGGTCTCCTTTCCAAATCTTCTGGAAGAAACCTCTGATTATATATCGGCCTTGGAGATGCAAGTTAGAGTCATGACCGCACTCACCGAACTCCTCGCTGGTGGTGGCGTGCCGGCCGATCGACTCGAGGGGCCTCGACCGTGA 606 0.5578 MASLQPDLDSIHSDTSPPSSLRKRTKFGPDSSRHNSLHPVRWRSDADRRIYSSKLVEALRHVLHRSPSLPPRPVGGHEIHETADRVLATTAKGRTRWSRAILASPLGRWRFQRQHKKVKKTTRGFKKPEIRKDRRLPALHKKACVLGRLVPGCRKVSFPNLLEETSDYISALEMQVRVMTALTELLAGGGVPADRLEGPRP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4300 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 188 IPR036638 GO:0046983
Prci1g4300 201 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g4300 201 MobiDBLite consensus disorder prediction 26 40 - -
Prci1g4300 201 CDD bHLH_AtIBH1_like 128 183 IPR044549 GO:0006355
Prci1g4300 201 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 44 186 IPR044660 GO:0006355
Prci1g4300 201 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4300 Prci-Chr1 57372889 57373944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4300 30 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 46.875 3.51e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4300 - - pcin:129310330 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4300 1 57372889 57373944 Prci3g3677 3 46104130 46105454 CCT
Prci1g4300 1 57372889 57373944 Prci3g3677 3 46104130 46105454 ECH
Prci1g4300 1 57372889 57373944 Prci1g4300 1 57372889 57373944 ECH