Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4280 ATGCCACTGGGGAAATATTACTGCGACTATTGCGACAAGCACATACAGGACACGCCTCCAGCTCGTAAACGACATCTTCAAGGCATCCAGCACCTCCGGGCTAAAGCTCTCTGGTACGATTCCCTCAAATTTCAAGATCCTAGGCAGGTGTATTCAGATGGATTTGTCAAAGGGGTTTGCACTCGCTTCGTCAAAACGGGTTACTGCCAGTACGGTGATTCTTGCAAGTATGTTCATCCAAGAATCTTGACCAATGCCAATCCTCAAGGGGGAGTACTTGATAATATGCAGCCAGCAGCATTAACAACGGCGACTAATCTGGTTGGCGGAGGCTGTCCACCAGGAAATGCGGTGCAAGGCAGTATGGGAATGGCATGGGACAATTTACCTCCGTCTTTGAAGCCTCCTCCTGAGGGTGGATATCCAGTCCTTCCCTTTTTGGACTGGGGATAG 453 0.4967 MPLGKYYCDYCDKHIQDTPPARKRHLQGIQHLRAKALWYDSLKFQDPRQVYSDGFVKGVCTRFVKTGYCQYGDSCKYVHPRILTNANPQGGVLDNMQPAALTTATNLVGGGCPPGNAVQGSMGMAWDNLPPSLKPPPEGGYPVLPFLDWG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4280 150 Gene3D Classic Zinc Finger 3 54 - -
Prci1g4280 150 Gene3D - 55 117 - -
Prci1g4280 150 PANTHER NUCLEASE-RELATED 1 150 - -
Prci1g4280 150 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Prci1g4280 150 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Prci1g4280 150 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Prci1g4280 150 SUPERFAMILY beta-beta-alpha zinc fingers 4 43 IPR036236 -
Prci1g4280 150 SUPERFAMILY CCCH zinc finger 59 80 IPR036855 GO:0046872
Prci1g4280 150 SMART c3hfinal6 54 81 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4280 17 101 C2H2 Transcription Factor Family AT5G18550 31.313 3.96e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1g4280 zf-U1 5.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4280 K13152 - qsa:O6P43_007391 227.639