Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4243 ATGACCAGAAACAGGGTTACTCTTGCATATCTCTCCAACGACGCTGCAAGGAAAACAACATATAAGAAAAGGAAGAAGGGTCTTGCCAAGAAGGTGAGCGAGCTAACCACTCTTTGTGGGATCGAAGCATGTGCTGTTGTTTTCAGCTCCTATGAACCTAAACCACAGGTGTGGCCAGATTCAAAAGGAGCTCAACAGGTAATCGCAAGGTTTCAGGATACACTTGCGCTGGATGAAAGAAAGAATTTGAACCAAGAGAGTTTTACTAGGCAAACGATTGCCAAAGTTAGCGTCCAGCTCAAGAAGCAATGTAAGGAGAATCGTGAGAAGGTGATGGAGCTAGCTTTGTTCCAGTGTGTTGAAGGGGAAAGTCTGGATGACAAGACGATAGTGGATCTTGATGACATTGATTGCCTGATCCAGAAGAACATAAACAACATCAGAAACAAGATGGATGAGTTTGTTTGA 468 0.4359 MTRNRVTLAYLSNDAARKTTYKKRKKGLAKKVSELTTLCGIEACAVVFSSYEPKPQVWPDSKGAQQVIARFQDTLALDERKNLNQESFTRQTIAKVSVQLKKQCKENREKVMELALFQCVEGESLDDKTIVDLDDIDCLIQKNINNIRNKMDEFV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4243 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Prci1g4243 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 PANTHER MADS BOX PROTEIN 3 151 - -
Prci1g4243 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Prci1g4243 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Prci1g4243 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4243 Prci-Chr1 57022712 57023928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4243 1 152 Type I MADS-box Gene Family AT5G48670 44.156 1.14e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci1g4243 SRF-TF 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4243 - - rvl:131308744 157.147