Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4239 ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAACCTCGAAGAGAAAGACAGCACATGTGCAACTGATCGATCTTCCGCACCGGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCGATGCTGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCCGTACATAAGAGTCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCGAGATAAAGATGTAGGATTTGATGTCGATACAAGGATGGGTAAGGTAGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGCCTGTTCCTCCGGATGAAATGAATTTAAGTCAAGATGAAGACATGATACCTTGGTTAACTTACCCAATGGATGACTCTTTGCAACATGAATATAGTTTTGATTTCACGCGTGATGTATCTGGGGTCACCGTAAACGAGTTCCCGGGTGCCTCAAATAATTTTGCTCTAATGGATAAAAGGTGTATCGGCAACCAGGTATATAAGGACTCTCACAAAAGTCCTGAGCATGATGTTTCAAGTTCAGAACAGGCAAATCCTACCAAGGTATCTTCAACTGGAGAAGTCGAGACTAGCAGGCCGAAAGGAAACAACAGCCAGTTATATCCACCATCATCGCAGCAATGTCAAACATCATTTGCATCTATTAGATCAAAAATATCAGATATCACTGAAAATAATACAAGTAATGCAATACTGCAATCACCTTGCGGGGAAATCACTCAGATTCCCTCTTCATCTAGTGGTTTTTGTAGCCTAAGTATGCAGAAACAAGATCCATTATGTCCTAGGAATAGTTCTAACACGATGAATTTCTCCCATTTTGTAAGACCTGCTGCTATTGTGAGAGCTAATCTTCAAAGCATCAGTATGATGTCTGGTTTGTCTTCTGCAAGACCAGTTAGCTTGGGAACTAGGAAAAAAGATGTTGATGCAAGTAGCAGTAACCCTCCTGAATCAATACTCGTTGATTTAGATAATCAAAAAAAGCTGGTCATGGACCTATCAAAGGCTGAGTTGAAACCGGCCAATCCAAAATCTCTCGGACAGAAGGATGATTTTGCAGAGCAGCATGACCCTGCCTGCAAAGAGGAGGGTGCATTTAAGAACGATCAAATTTCCAATCAAGTTCCCACGGAAAGTGGCACTAAAGGGCAACCAGCTGCTGAAAAAAACATGAACCCTGAAGTAGCCTCTTCCTCCATTTGCTCAGGAAATAGCATGAAGAGAGATTCAGATAATGCAGATAAGAATTTGAAGCGAAAAAGTCTAGATACTGAGGACTCTGAGTGTCACAGTGAAGAAGTTGAGGAAGAATCAGTGGGTATCAAAAAGGCAGCTCCTGCACGAGGTACAAGTTCTAAGAGAAGTCGTGCAGCTGAAGTGCATAATTTATCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGCGCATTACAAGAACTTATCCCAAATTGCAATAAGGTGGATAAGGCCTCGATGCTGGATGAAGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATGCGCCTCCAAATCCGTTGATGTTGCACCCTGGAATGCAGCACATGCAGGCACCACATATGGCTTCATTCTCACCTATAGGAATTGGCATGCAAATGGGGTTAGGAATGGGTTATGGGTTGAGCATGCCTGAGATGAATGGTAGATCCCCTAGATTCCCTATGGTTCAGGTGCCCCAAATGCAAGGACCTCATTTCCCTGTTTTACCTATGCCTGGACCCACTGCTGCCTTGCATGGGATGCCAAGATCAAGCCACCAAGCATTCGGGTTTCCTGGTCAGGGATTTTACATGCCGATGCTAAATGCTCCAGGACTTTCTGTGTCAGGAGGGCCCGTCATGAACCCTTCAACTCCGGGACAAAACGCTTTAGGAGCTGCAGGAGTTGGGGAAACTGTTGATTCGGCTTCAGCCTCTAGTTTAAAGGATGCAATGCCAAATGTGGATTCACAAGTCATGCTAAGCACGGGTGTCAGTAACTCCACAATTCAGATGTCTACTCGGTGTGAAGCAACGAATGTTGGAGTTGATCAGTCAGCACCAGTGCAGACTTGCGGGCATACCTCCAATATTAATGACAGTGGAGCTACAAATCCTGGTAAAGAAGATAACCTTGTGATTGGTAAATCTTGTAATGACTGA 2223 0.4363 MPLYELYRMTKANLEEKDSTCATDRSSAPENDFFELVWENGQISMLGKSSRARKSPVHKSLPSHSLPSHSPRTRDKDVGFDVDTRMGKVGDLDSGLNEIPMPVPPDEMNLSQDEDMIPWLTYPMDDSLQHEYSFDFTRDVSGVTVNEFPGASNNFALMDKRCIGNQVYKDSHKSPEHDVSSSEQANPTKVSSTGEVETSRPKGNNSQLYPPSSQQCQTSFASIRSKISDITENNTSNAILQSPCGEITQIPSSSSGFCSLSMQKQDPLCPRNSSNTMNFSHFVRPAAIVRANLQSISMMSGLSSARPVSLGTRKKDVDASSSNPPESILVDLDNQKKLVMDLSKAELKPANPKSLGQKDDFAEQHDPACKEEGAFKNDQISNQVPTESGTKGQPAAEKNMNPEVASSSICSGNSMKRDSDNADKNLKRKSLDTEDSECHSEEVEEESVGIKKAAPARGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYAPPNPLMLHPGMQHMQAPHMASFSPIGIGMQMGLGMGYGLSMPEMNGRSPRFPMVQVPQMQGPHFPVLPMPGPTAALHGMPRSSHQAFGFPGQGFYMPMLNAPGLSVSGGPVMNPSTPGQNALGAAGVGETVDSASASSLKDAMPNVDSQVMLSTGVSNSTIQMSTRCEATNVGVDQSAPVQTCGHTSNINDSGATNPGKEDNLVIGKSCND 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4239 740 MobiDBLite consensus disorder prediction 715 740 - -
Prci1g4239 740 MobiDBLite consensus disorder prediction 315 329 - -
Prci1g4239 740 MobiDBLite consensus disorder prediction 180 215 - -
Prci1g4239 740 Gene3D - 460 523 IPR036638 GO:0046983
Prci1g4239 740 MobiDBLite consensus disorder prediction 89 108 - -
Prci1g4239 740 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Prci1g4239 740 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 IPR044273 GO:0003700|GO:0006355
Prci1g4239 740 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Prci1g4239 740 MobiDBLite consensus disorder prediction 169 215 - -
Prci1g4239 740 FunFam Basic helix-loop-helix transcription factor 460 523 - -
Prci1g4239 740 MobiDBLite consensus disorder prediction 313 332 - -
Prci1g4239 740 CDD bHLH_AtPIF_like 465 527 IPR047265 -
Prci1g4239 740 MobiDBLite consensus disorder prediction 376 416 - -
Prci1g4239 740 MobiDBLite consensus disorder prediction 417 436 - -
Prci1g4239 740 MobiDBLite consensus disorder prediction 374 474 - -
Prci1g4239 740 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 526 IPR036638 GO:0046983
Prci1g4239 740 MobiDBLite consensus disorder prediction 48 79 - -
Prci1g4239 740 SMART finulus 471 520 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4239 Prci-Chr1 56979019 56988638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4239 1 542 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.545 9.13e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g4239 HLH 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4239 K12126 - gmx:100794974 770.77