Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4236 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAACTAAGGAAAGGCCTCTGGTCTCCCGAGGAAGACGAGAAGCTTCTCAATTACATCACCAAGCATGGCCATGGATGTTGGAGCTCCGTACCCAAACTTGCCGGTTTGCAGAGGTGTGGCAAGAGCTGCAGGCTGAGGTGGATAAATTACCTGAGGCCCGATTTGAAAAGAGGGGCATTCTCGCAGCAGGAAGAGAATTTGATAATTGAACTCCATGCAGTCCTAGGCAACAGGTGGTCGCAGATTGCAGCTCAGTTACCCGGAAGAACTGACAATGAGATTAAAAATCTATGGAATTCCTGCCTCAAGAAGAAGCTTAGGCAGAGAGGCATTGACCCGAACACCCACAAGCCGCTCTCTGAGGTTGAGAACGACAACGACAAACCCACCGCAGCCGACAAGAGCCATCACAAAGCCTCAGGGGTATCCAATGATTTGAGAGTAGCAGAGCCTGCAAAGCCGAGGCCAAATGCAATGCCTTCGGAGCGATACCCGCTTGAAGTTTCCTCCGGCTCCAAGGTCGCCAATAGCTGCAGCAATTTGACCAGCAATCGACCCGCCCAGGATTTGTTCTTTGATGCCTCCATTACCAGTTGTGGACCTTCTGATATGATGAGTTACTTCTCTTTTCAGCAGTTGAACTATCCACCACATGTTGGGCTCCCTGCAAATCCCAACAGCTCTCTTTGCTTCATGTCAGGTTCTAGTTCCTCTCAGGTGATGTCAGAGCTCAATTCTAGTATGACTCCTGCTATGCTTAATTCTGTGCCAAGCTCAATTTTCCCAACAACACATGTAAGTACCACTGGCACCGCGAGTCTCCAGTCTGATAATCCTTCCATATCCTCTGGCGATATTGATGGGGTTCAGAACTGGGAAGCTAGTATCCTCAATAACAGCAGCAGCAAAAGCAATGGGCGCAGTGGGAGTATCCAATTGCAAAGCAGCAATAACTTCCTCGAGAACAACAGTTTAGCATGGGGATTGGCAGACCCTGTGAAGGCTGATAGAGATGCCCAAGTACACTCACAAGCAGAACAAGAAGACATTAAATGGTCTGAGTATCTGAACTCTCCATTTTTTCTGGCAAACACGGCACAGAATCAAAACTGTCAATCTATTTACAGTGAGGTTAAACCAGAGACAGGCTTCATGACAGATGAATCAAGCACTAGTTGGCACCACACCCAGCATCCATCCGTTTTTCAAGCTTCAGACATCTACACCAAGGATTTGCAAAGATTCTCAGTGGCTTTTGGACAAACCCTCTAG 1302 0.4785 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDNDKPTAADKSHHKASGVSNDLRVAEPAKPRPNAMPSERYPLEVSSGSKVANSCSNLTSNRPAQDLFFDASITSCGPSDMMSYFSFQQLNYPPHVGLPANPNSSLCFMSGSSSSQVMSELNSSMTPAMLNSVPSSIFPTTHVSTTGTASLQSDNPSISSGDIDGVQNWEASILNNSSSKSNGRSGSIQLQSSNNFLENNSLAWGLADPVKADRDAQVHSQAEQEDIKWSEYLNSPFFLANTAQNQNCQSIYSEVKPETGFMTDESSTSWHHTQHPSVFQASDIYTKDLQRFSVAFGQTL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4236 433 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci1g4236 433 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci1g4236 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci1g4236 433 FunFam MYB transcription factor 68 140 - -
Prci1g4236 433 MobiDBLite consensus disorder prediction 119 153 - -
Prci1g4236 433 Gene3D - 11 67 - -
Prci1g4236 433 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Prci1g4236 433 SMART sant 66 114 IPR001005 -
Prci1g4236 433 SMART sant 13 63 IPR001005 -
Prci1g4236 433 CDD SANT 17 61 IPR001005 -
Prci1g4236 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci1g4236 433 FunFam Myb transcription factor 11 67 - -
Prci1g4236 433 Gene3D - 68 144 - -
Prci1g4236 433 MobiDBLite consensus disorder prediction 119 179 - -
Prci1g4236 433 CDD SANT 69 109 IPR001005 -
Prci1g4236 433 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci1g4236 433 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci1g4236 433 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4236 Prci-Chr1 56959028 56961045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4236 1 433 MYB Transcription Factor Family AT1G09540 48.533 4.14e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g4236 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4236 K09422 - qsa:O6P43_010970 588.956