Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4225 ATGTACTCATGTAGGTGGTTCCGTGCTAATCCAGAACTCTGGGCAAGAAGAAATGATGAGTTATTTGGTTTGAAGTCTCCAAAGAAGGAGAAGCGTGTGAGAAGGGACAGTAAACAGCAACCCCCTGTTGAAGCTCCTTATGTTCCTCAGAATGTGGTCAAATCTACCAAATCCGTTCCTGATAAAACAATTGAAATATTTGAAGGCATGACTATTGTTGAGCTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTGCAAGATATTCTGGTAAATATTGGGGAAAAAGTTGAATCAGAGTTTGAGCCTCTCAGTGTTGATATTGCAGAGCTTGTTGCGATGGAAGTTGGTGTCAATGTTAAGAGGCTACATTCTACTGAAGGTACAGAGATTTTACCACGGCCTGCAGTTGTAACAGTGATGGGTCACGTTGACCATGGTAAAACCTCCCTTCTTGATGCTTTGCGTCAAACATCAGTAGCAGCCAAGGAGGCTGGGGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCTGGAGCATCAATCACATTTCTGGACACACCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCTGCAGTCACAGATGTGGTAGTGCTTGTGGTTGCTGCAGATGATGGTGTGATGCCTCAGACACTTGAAGCTATATCCCACGCGAAAGCAGCTAATGTACCAGTAGTAGTTGCAATAAATAAATGTGATAAACCAGGAGCAAATCCTGAAAGAGTAAAGCTTCAGCTTGCATCAGAGGGCTTGTTGCTGGAAGAGATGGGTGGGGATGTTCAGGTGGTTGAAGTTTCTGCAATTATGAAAACTGGACTGGATAACTTAGAGGAAGCTTTGCTCCTTCAGGCTGAAATGATGGATCTGAAGGCTCGAATTGATGGCCCTGCTCAAGCTTATGTGGTGGAAGCTAGACTTGATAAAGGACGAGGTCCATTAGCTACTGCTATTGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTATAGGCTCAGAATGGGGCAAAATAAGGGCTATTAGAGAAGTGACAGGTAAGTTGACTGACAGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGGGGGACTCCCATGGCTGGTGATGATGTTATTGTTGTTCATTCAGAAGAGCGAGCACGATTGCTTAGTGCTGGCAGGAAAAGGAAATATGAGGAGGATAGGCTTAAGAAAATGGTCCAGGAAAAGACAGATTCTATGGAGTCATCTGAGGATGGTCCTCAGAGGGTTGAATTGCCAATAGTAGTGAAAGCTGATGTTCAGGGAACTGTCCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGCGGTGCATGCATAGTTGGGTTCAATGTGAAGAGTCCACCTAGTCCTGTCACTCAGGCAGCAGGCCGTGCCAATATAAAGATAGTGCTGCACCGTGTGATTTACCACCTCTTGGAGGAGATGGGGAATTTGATAATAGAGAAGGCCCCAGGGACGTTTGAAACCCAGGTAGCCGGGGAGGCAGAGGTGCTGAGCATATTTGAGCTTAAAGGGAGGAGCAAGTCCAAGGGGCCTGATGTGAAGATAGCCGGCTGTCGGGTCACCGACGGTTGTGTGACAAAATCAGGAATCATGAGGCTTCTGAGGAGCGGGGAAGTGATGTTTGAAGGTAACTGTGCGTCCCTGAGAAGAGAAACGCAGGACGTAGAGACTGTGAAGAAGGGAAGTGAGTGTGGGCTTGTAATAAGTGACTGGCGCGATTTCCAGGTTGGAGACGTCATACAGTGTTTGGAACAAGTGGTGAGGAAGCCCAAGTTCATTAAGTCGCAGAGTGGTGCTGTTCGAATTGAGTGTTGA 1965 0.4682 MYSCRWFRANPELWARRNDELFGLKSPKKEKRVRRDSKQQPPVEAPYVPQNVVKSTKSVPDKTIEIFEGMTIVELAKRTGKSVSSLQDILVNIGEKVESEFEPLSVDIAELVAMEVGVNVKRLHSTEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAISHAKAANVPVVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAIMKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLATAIVKAGTLVCGQHVVIGSEWGKIRAIREVTGKLTDRATPAMPVEIEGLRGTPMAGDDVIVVHSEERARLLSAGRKRKYEEDRLKKMVQEKTDSMESSEDGPQRVELPIVVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPSPVTQAAGRANIKIVLHRVIYHLLEEMGNLIIEKAPGTFETQVAGEAEVLSIFELKGRSKSKGPDVKIAGCRVTDGCVTKSGIMRLLRSGEVMFEGNCASLRRETQDVETVKKGSECGLVISDWRDFQVGDVIQCLEQVVRKPKFIKSQSGAVRIEC 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4225 654 Gene3D Translation factors 306 424 - -
Prci1g4225 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 303 IPR027417 -
Prci1g4225 654 SUPERFAMILY Translation proteins 307 389 IPR009000 -
Prci1g4225 654 CDD mtIF2_IVc 542 632 - -
Prci1g4225 654 FunFam Translation initiation factor IF-2 130 305 - -
Prci1g4225 654 Gene3D Translation factors 536 639 - -
Prci1g4225 654 SUPERFAMILY Translation proteins 537 639 IPR009000 -
Prci1g4225 654 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 133 303 IPR000795 GO:0003924|GO:0005525
Prci1g4225 654 CDD IF2_mtIF2_II 309 404 IPR044145 -
Prci1g4225 654 MobiDBLite consensus disorder prediction 26 45 - -
Prci1g4225 654 NCBIfam translation initiation factor IF-2 61 637 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4225 654 Pfam Translation-initiation factor 2 410 524 IPR023115 -
Prci1g4225 654 Gene3D - 430 534 IPR036925 -
Prci1g4225 654 NCBIfam small GTP-binding protein domain 136 283 IPR005225 GO:0005525
Prci1g4225 654 FunFam Translation initiation factor IF-2 429 536 - -
Prci1g4225 654 Hamap Translation initiation factor IF-2 [infB]. 5 640 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4225 654 CDD IF2_eIF5B 137 300 - -
Prci1g4225 654 Gene3D - 131 305 IPR027417 -
Prci1g4225 654 Pfam Elongation factor Tu GTP binding domain 138 294 IPR000795 GO:0003924|GO:0005525
Prci1g4225 654 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 38 649 IPR015760 -
Prci1g4225 654 FunFam Translation initiation factor IF-2 537 641 - -
Prci1g4225 654 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 413 542 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4225 Prci-Chr1 56890506 56894243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4225 134 618 Eukaryotic Initiation Factors Gene Family AT1G21160 27.158 1.46e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4225 K02519 - vvi:100266672 1019.61