Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4224 ATGACTATTGTTGAGCTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTGCAAGATATTCTGGTAAATATTGGGGAAAAAGTTGAATCAGAGTTTGAGCCTCTCAGTGTTGATATTGCAGAGCTTGTTGCGATGGAAGTTGGTGTCAATGTTAAGAGGCTACATTCTACTGAAGGTACAGAGATTTTACCACGGCCTGCAGTTGTAACAGTGATGGGTCACGTTGACCATGGTAAAACCTCCCTTCTTGATGCTTTGCGTCAAACATCAGTAGCAGCCAAGGAGGCTGGGGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCTGGAGCATCAATCACATTTCTGGACACACCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCTGCAGTCACAGATGTGGTAGTGCTTGTGGTTGCTGCAGATGATGGTGTGATGCCTCAGACACTTGAAGCTATATCCCACGCGAAAGCAGCTAATGTACCAGTAGTAGTTGCAATAAATAAATGTGATAAACCAGGAGCAAATCCTGAAAGAGTAAAGCTTCAGCTTGCATCAGAGGGCTTGTTGCTGGAAGAGATGGGTGGGGATGTTCAGGTGGTTGAAGTTTCTGCAATTATGAAAACTGGACTGGATAACTTAGAGGAAGCTTTGCTCCTTCAGGCTGAAATGATGGATCTGAAGGCTCGAATTGATGGCCCTGCTCAAGCTTATGTGGTGGAAGCTAGACTTGATAAAGGACGAGGTCCATTAGCTACTGCTATTGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTATAGGCTCAGAATGGGGCAAAATAAGGGCTATTAGAGAAGTGACAGGTAAGTTGACTGACAGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGGGGGACTCCCATGGCTGGTGATGATGTTATTGTTGTTCATTCAGAAGAGCGAGCACGATTGCTTAGTGCTGGCAGGAAAAGGAAATATGAGGAGGATAGGCTTAAGAAAATGGTCCAGGAAAAGACAGATTCTATGGAGTCATCTGAGGATGGTCCTCAGAGGGTTGAATTGCCAATAGTAGTGAAAGCTGATGTTCAGGGAACTGTCCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGCGGTGCATGCATAGTTGGGTTCAATGTGAAGAGTCCACCTAGTCCTGTCACTCAGGCAGCAGGCCGTGCCAATATAAAGATAGTGCTGCACCGTGTGATTTACCACCTCTTGGAGGAGATGGGGAATTTGATAATAGAGAAGGCCCCAGGGACGTTTGAAACCCAGGTAGCCGGGGAGGCAGAGGTGCTGAGCATATTTGAGCTTAAAGGGAGGAGCAAGTCCAAGGGGCCTGATGTGAAGATAGCCGGCTGTCGGGTCACCGACGGTTGTGTGACAAAATCAGGAATCATGAGGCTTCTGAGGAGCGGGGAAGTGATGTTTGAAGGTAACTGTGCGTCCCTGAGAAGAGAAACGCAGGACGTAGAGACTGTGAAGAAGGGAAGTGAGTGTGGGCTTGTAATAAGTGACTGGCGCGATTTCCAGGTTGGAGACGTCATACAGTGTTTGGAACAAGTGGTGAGGAAGCCCAAGTTCATTAAGTCGCAGAGTGGTGCTGTTCGAATTGAGTGTTGA 1758 0.4738 MTIVELAKRTGKSVSSLQDILVNIGEKVESEFEPLSVDIAELVAMEVGVNVKRLHSTEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAISHAKAANVPVVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAIMKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLATAIVKAGTLVCGQHVVIGSEWGKIRAIREVTGKLTDRATPAMPVEIEGLRGTPMAGDDVIVVHSEERARLLSAGRKRKYEEDRLKKMVQEKTDSMESSEDGPQRVELPIVVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPSPVTQAAGRANIKIVLHRVIYHLLEEMGNLIIEKAPGTFETQVAGEAEVLSIFELKGRSKSKGPDVKIAGCRVTDGCVTKSGIMRLLRSGEVMFEGNCASLRRETQDVETVKKGSECGLVISDWRDFQVGDVIQCLEQVVRKPKFIKSQSGAVRIEC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4224 585 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 234 IPR000795 GO:0003924|GO:0005525
Prci1g4224 585 FunFam Translation initiation factor IF-2 468 572 - -
Prci1g4224 585 Gene3D Translation factors 237 355 - -
Prci1g4224 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 234 IPR027417 -
Prci1g4224 585 NCBIfam translation initiation factor IF-2 1 568 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4224 585 CDD mtIF2_IVc 473 563 - -
Prci1g4224 585 Gene3D - 361 465 IPR036925 -
Prci1g4224 585 Gene3D Translation factors 467 570 - -
Prci1g4224 585 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 3 580 IPR015760 -
Prci1g4224 585 Gene3D - 62 236 IPR027417 -
Prci1g4224 585 FunFam Translation initiation factor IF-2 360 467 - -
Prci1g4224 585 CDD IF2_eIF5B 68 231 - -
Prci1g4224 585 Hamap Translation initiation factor IF-2 [infB]. 2 571 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4224 585 FunFam Translation initiation factor IF-2 61 236 - -
Prci1g4224 585 NCBIfam small GTP-binding protein domain 67 215 IPR005225 GO:0005525
Prci1g4224 585 CDD IF2_mtIF2_II 240 335 IPR044145 -
Prci1g4224 585 Pfam Translation-initiation factor 2 341 455 IPR023115 -
Prci1g4224 585 SUPERFAMILY Translation proteins 238 320 IPR009000 -
Prci1g4224 585 SUPERFAMILY Translation proteins 468 570 IPR009000 -
Prci1g4224 585 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 344 473 IPR036925 -
Prci1g4224 585 Pfam Elongation factor Tu GTP binding domain 69 225 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4224 Prci-Chr1 56890109 56894243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4224 65 549 Eukaryotic Initiation Factors Gene Family AT1G21160 27.158 2.33e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4224 K02519 - qsa:O6P43_014736 950.658