Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4221 ATGGCGTGGAGAGAGCTTGGAAGAAAGAGACTATATATGAACTTTGCCAGAGCTCTGGCTTTAGTGCCATCTAGGCATGTTGCAAGGTCATGCTCTTCATCTACCTTTGCAGCAAAATCTGCTTATGCATCAGCAGGATGCTTAACTGATTTTATCAACCGCTCATCTGCAGGAGCAGCTGGTTTTTGCAATGGAACAAAAGAACATGGAATACGATATAGTAGGTGGTTCCGTGCTAATCCAGAACTCTGGGCAAGAAGAAATGATGAGTTATTTGGTTTGAAGTCTCCAAAGAAGGAGAAGCGTGTGAGAAGGGACAGTAAACAGCAACCCCCTGTTGAAGCTCCTTATGTTCCTCAGAATGTGGTCAAATCTACCAAATCCGTTCCTGATAAAACAATTGAAATATTTGAAGGCATGACTATTGTTGAGCTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTGCAAGATATTCTGGTAAATATTGGGGAAAAAGTTGAATCAGAGTTTGAGCCTCTCAGTGTTGATATTGCAGAGCTTGTTGCGATGGAAGTTGGTGTCAATGTTAAGAGGCTACATTCTACTGAAGGTACAGAGATTTTACCACGGCCTGCAGTTGTAACAGTGATGGGTCACGTTGACCATGGTAAAACCTCCCTTCTTGATGCTTTGCGTCAAACATCAGTAGCAGCCAAGGAGGCTGGGGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCTGGAGCATCAATCACATTTCTGGACACACCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCTGCAGTCACAGATGTGGTAGTGCTTGTGGTTGCTGCAGATGATGGTGTGATGCCTCAGACACTTGAAGCTATATCCCACGCGAAAGCAGCTAATGTACCAGTAGTAGTTGCAATAAATAAATGTGATAAACCAGGAGCAAATCCTGAAAGAGTAAAGCTTCAGCTTGCATCAGAGGGCTTGTTGCTGGAAGAGATGGGTGGGGATGTTCAGGTGGTTGAAGTTTCTGCAATTATGAAAACTGGACTGGATAACTTAGAGGAAGCTTTGCTCCTTCAGGCTGAAATGATGGATCTGAAGGCTCGAATTGATGGCCCTGCTCAAGCTTATGTGGTGGAAGCTAGACTTGATAAAGGACGAGGTCCATTAGCTACTGCTATTGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTATAGGCTCAGAATGGGGCAAAATAAGGGCTATTAGAGAAGTGACAGGTAAGTTGACTGACAGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGGGGGACTCCCATGGCTGGTGATGATGTTATTGTTGTTCATTCAGAAGAGCGAGCACGATTGCTTAGTGCTGGCAGGAAAAGGAAATATGAGGAGGATAGGCTTAAGAAAATGGTCCAGGAAAAGACAGATTCTATGGAGTCATCTGAGGATGGTCCTCAGAGGGTTGAATTGCCAATAGTAGTGAAAGCTGATGTTCAGGGAACTGTCCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGCGGTGCATGCATAGTTGGGTTCAATGTGAAGAGTCCACCTAGTCCTGTCACTCAGGCAGCAGGCCGTGCCAATATAAAGTGCTGCACCGTGTGA 1755 0.4553 MAWRELGRKRLYMNFARALALVPSRHVARSCSSSTFAAKSAYASAGCLTDFINRSSAGAAGFCNGTKEHGIRYSRWFRANPELWARRNDELFGLKSPKKEKRVRRDSKQQPPVEAPYVPQNVVKSTKSVPDKTIEIFEGMTIVELAKRTGKSVSSLQDILVNIGEKVESEFEPLSVDIAELVAMEVGVNVKRLHSTEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAISHAKAANVPVVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAIMKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLATAIVKAGTLVCGQHVVIGSEWGKIRAIREVTGKLTDRATPAMPVEIEGLRGTPMAGDDVIVVHSEERARLLSAGRKRKYEEDRLKKMVQEKTDSMESSEDGPQRVELPIVVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPSPVTQAAGRANIKCCTV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4221 584 NCBIfam small GTP-binding protein domain 206 354 IPR005225 GO:0005525
Prci1g4221 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 373 IPR027417 -
Prci1g4221 584 SUPERFAMILY Translation proteins 377 459 IPR009000 -
Prci1g4221 584 CDD IF2_eIF5B 207 370 - -
Prci1g4221 584 Pfam Elongation factor Tu GTP binding domain 208 364 IPR000795 GO:0003924|GO:0005525
Prci1g4221 584 Gene3D - 201 375 IPR027417 -
Prci1g4221 584 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 203 373 IPR000795 GO:0003924|GO:0005525
Prci1g4221 584 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 483 573 IPR036925 -
Prci1g4221 584 Gene3D - 502 583 IPR036925 -
Prci1g4221 584 FunFam Translation initiation factor IF-2 499 583 - -
Prci1g4221 584 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 98 580 IPR015760 -
Prci1g4221 584 Gene3D Translation factors 376 494 - -
Prci1g4221 584 Pfam Translation-initiation factor 2 480 580 IPR023115 -
Prci1g4221 584 NCBIfam translation initiation factor IF-2 131 579 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4221 584 FunFam Translation initiation factor IF-2 200 375 - -
Prci1g4221 584 CDD IF2_mtIF2_II 379 474 IPR044145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4221 Prci-Chr1 56889111 56893733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4221 204 564 Eukaryotic Initiation Factors Gene Family AT1G21160 29.040 4.00e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4221 K02519 - qsa:O6P43_014736 840.876