Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4219 ATGGCGTGGAGAGAGCTTGGAAGAAAGAGACTATATATGAACTTTGCCAGAGCTCTGGCTTTAGTGCCATCTAGGCATGTTGCAAGGTCATGCTCTTCATCTACCTTTGCAGCAAAATCTGCTTATGCATCAGCAGGATGCTTAACTGATTTTATCAACCGCTCATCTGCAGGAGCAGCTGGTTTTTGCAATGGAACAAAAGAACATGGAATACGATATAGTAGGTGGTTCCGTGCTAATCCAGAACTCTGGGCAAGAAGAAATGATGAGTTATTTGGTTTGAAGTCTCCAAAGAAGGAGAAGCGTGTGAGAAGGGACAGTAAACAGCAACCCCCTGTTGAAGCTCCTTATGTTCCTCAGAATGTGGTCAAATCTACCAAATCCGTTCCTGATAAAACAATTGAAATATTTGAAGGCATGACTATTGTTGAGCTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTGCAAGATATTCTGGTAAATATTGGGGAAAAAGTTGAATCAGAGTTTGAGCCTCTCAGTGTTGATATTGCAGAGCTTGTTGCGATGGAAGTTGGTGTCAATGTTAAGAGGCTACATTCTACTGAAGGTACAGAGATTTTACCACGGCCTGCAGTTGTAACAGTGATGGGTCACGTTGACCATGGTAAAACCTCCCTTCTTGATGCTTTGCGTCAAACATCAGTAGCAGCCAAGGAGGCTGGGGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCTGGAGCATCAATCACATTTCTGGACACACCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCTGCAGTCACAGATGTGGTAGTGCTTGTGGTTGCTGCAGATGATGGTGTGATGCCTCAGACACTTGAAGCTATATCCCACGCGAAAGCAGCTAATGTACCAGTAGTAGTTGCAATAAATAAATGTGATAAACCAGGAGCAAATCCTGAAAGAGTAAAGCTTCAGCTTGCATCAGAGGGCTTGTTGCTGGAAGAGATGGGTGGGGATGTTCAGGTGGTTGAAGTTTCTGCAATTATGAAAACTGGACTGGATAACTTAGAGGAAGCTTTGCTCCTTCAGGCTGAAATGATGGATCTGAAGGCTCGAATTGATGGCCCTGCTCAAGCTTATGTGGTGGAAGCTAGACTTGATAAAGGACGAGGTCCATTAGCTACTGCTATTGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTATAGGCTCAGAATGGGGCAAAATAAGGGCTATTAGAGAAGTGACAGGTAAGTTGACTGACAGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGGGGGACTCCCATGGCTGGTGATGATGTTATTGTTGTTCATTCAGAAGAGCGAGCACGATTGCTTAGTGCTGGCAGGAAAAGGAAATATGAGGAGGATAGGCTTAAGAAAATGGTCCAGGAAAAGACAGATTCTATGGAGTCATCTGAGGATGGTCCTCAGAGGGTTGAATTGCCAATAGTAGTGAAAGCTGATGTTCAGGGAACTGTCCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGCGGTGCATGCATAGTTGGGTTCAATGTGAAGAGTCCACCTAGTCCTGTCACTCAGGCAGCAGGCCGTGCCAATATAAAGATAGTGCTGCACCGTGTGATTTACCACCTCTTGGAGGAGATGGGGAATTTGATAATAGAGAAGGCCCCAGGGACGTTTGAAACCCAGGTAGCCGGGGAGGCAGAGGTGCTGAGCATATTTGAGCTTAAAGGGAGGAGCAAGTCCAAGGGGCCTGATGTGAAGATAGCCGGCTGTCGGGTCACCGACGGTTGTGTGACAAAATCAGGAATCATGAGGCTTCTGAGGAGCGGGGAAGTGATGTTTGAAGGTAACTGTGCGTCCCTGAGAAGAGAAACGCAGGACGTAGAGACTGTGAAGAAGGGAAGTGAGTGTGGGCTTGTAATAAGTGACTGGCGCGATTTCCAGGTTGGAGACGTCATACAGTGTTTGGAACAAGTGGTGAGGAAGCCCAAGTTCATTAAGTCGCAGAGTGGTGCTGTTCGAATTGAGTGTTGA 2175 0.4653 MAWRELGRKRLYMNFARALALVPSRHVARSCSSSTFAAKSAYASAGCLTDFINRSSAGAAGFCNGTKEHGIRYSRWFRANPELWARRNDELFGLKSPKKEKRVRRDSKQQPPVEAPYVPQNVVKSTKSVPDKTIEIFEGMTIVELAKRTGKSVSSLQDILVNIGEKVESEFEPLSVDIAELVAMEVGVNVKRLHSTEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAISHAKAANVPVVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAIMKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLATAIVKAGTLVCGQHVVIGSEWGKIRAIREVTGKLTDRATPAMPVEIEGLRGTPMAGDDVIVVHSEERARLLSAGRKRKYEEDRLKKMVQEKTDSMESSEDGPQRVELPIVVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPSPVTQAAGRANIKIVLHRVIYHLLEEMGNLIIEKAPGTFETQVAGEAEVLSIFELKGRSKSKGPDVKIAGCRVTDGCVTKSGIMRLLRSGEVMFEGNCASLRRETQDVETVKKGSECGLVISDWRDFQVGDVIQCLEQVVRKPKFIKSQSGAVRIEC 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4219 724 SUPERFAMILY Translation proteins 607 709 IPR009000 -
Prci1g4219 724 FunFam Translation initiation factor IF-2 499 606 - -
Prci1g4219 724 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 483 612 IPR036925 -
Prci1g4219 724 SUPERFAMILY Translation proteins 377 459 IPR009000 -
Prci1g4219 724 CDD IF2_eIF5B 207 370 - -
Prci1g4219 724 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 203 373 IPR000795 GO:0003924|GO:0005525
Prci1g4219 724 FunFam Translation initiation factor IF-2 607 711 - -
Prci1g4219 724 Gene3D - 201 375 IPR027417 -
Prci1g4219 724 Pfam Elongation factor Tu GTP binding domain 208 364 IPR000795 GO:0003924|GO:0005525
Prci1g4219 724 Gene3D Translation factors 606 709 - -
Prci1g4219 724 CDD mtIF2_IVc 612 702 - -
Prci1g4219 724 NCBIfam translation initiation factor IF-2 131 707 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4219 724 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 98 719 IPR015760 -
Prci1g4219 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 373 IPR027417 -
Prci1g4219 724 Gene3D Translation factors 376 494 - -
Prci1g4219 724 Pfam Translation-initiation factor 2 480 594 IPR023115 -
Prci1g4219 724 NCBIfam small GTP-binding protein domain 206 353 IPR005225 GO:0005525
Prci1g4219 724 FunFam Translation initiation factor IF-2 200 375 - -
Prci1g4219 724 CDD IF2_mtIF2_II 379 474 IPR044145 -
Prci1g4219 724 Hamap Translation initiation factor IF-2 [infB]. 8 710 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Prci1g4219 724 Gene3D - 500 604 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4219 Prci-Chr1 56889111 56894243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4219 204 688 Eukaryotic Initiation Factors Gene Family AT1G21160 27.158 2.51e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4219 K02519 - qsa:O6P43_014736 1075.46