Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4183 ATGGGGAAAGCCTCTAGCTCTTCGTCTTCCTCTATCAGCAGCAGCAACCACCCACTCATCTCAACTGCTTCATCTCTCACCCGCCTCCACAACTCTGACCTTCCCACAGATCTCAGGCTCGGTCTCAGCATTTCAGCCACTCAACATGTTGGCTCTTCTGTTTCAAGGGGGCAGCCAATGGATTGGATCCCAAACCATCGAGCTCATGCTGCAGAAGTAAATGATTGTGGCGATCATAGCAGCTTGTTTGTAAAGGTGTACATGGAAGGCATTCCAATAGGCCGAAAACTCAATCTGGTTGCGCACGACGGCTACCATGAGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAGGAAGGTGATTTGGTTATGGTCGGCGATGTTCCTTGGGAAATGTTCCTATCGACTGTGAAGAGATTGAAGATAACGAGGGTAGACGCATTCGGATGTTGA 525 0.4971 MGKASSSSSSSISSSNHPLISTASSLTRLHNSDLPTDLRLGLSISATQHVGSSVSRGQPMDWIPNHRAHAAEVNDCGDHSSLFVKVYMEGIPIGRKLNLVAHDGYHELVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4183 174 Gene3D - 76 173 - -
Prci1g4183 174 ProSiteProfiles PB1 domain profile. 81 171 IPR000270 GO:0005515
Prci1g4183 174 Pfam AUX/IAA family 71 168 IPR033389 -
Prci1g4183 174 SUPERFAMILY CAD & PB1 domains 78 166 - -
Prci1g4183 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 169 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4183 Prci-Chr1 56693098 56695196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4183 85 166 B3 DNA Binding Superfamily AT4G23980 40.244 1.05e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1g4183 AUX_IAA 1.3e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4183 K14484 - gmx:100781660 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4183 1 56693098 56695196 Prci3g3628 3 45694081 45695180 CCT