LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g4180	ATGGAAAACCAACAACACCGCCGTGAATTGACCTCCACTAGCTCGGGCTTCTTCCTCCGTCAGAACTTGGATCCAACAGACAATCACGACTCCAGCCATCGTCTTAACATCAAAGAAATGGATTTCTTCTCTTCCGTTTCACTCGGTAAATCTTTTGAGACTAGAAATCACCACGCCCTAGATCCTCATGACAGGACGATCAATCACTATGGATCATCAAGTGCTCCCTCATCGGATCGCCCGGTCAACACTGGACTGAATTTGAACTGTGCAAGTCATGGAATGCCGAGATTGGAAAACGAAGAGAAGATCGACGCTGAATCAAAATTAATCCAAAGGGAATTGCGGAGACTGCATGAAGAGAATCAGAAGTTGAAGAACATGCTGGAACAGATCACGAAAGGCTATAACCAACTGCAGGCACATCTGTTAATCGCTCTGCATACACAAAAGAACGTTGAAGCAAATGGGATGTTGTCGGGGCAACAGGCATTGGACCCACGGCAGTCCACCAAATTAGACATGAACAATTCGGTTTCAGACGATATGACTCAGCAAGAGCTTTCAGTCTCTCCTTCATCCAACAATGCGGAGTTAATGTCAAAGCAACGAGACCACCACTACCACCACCAATCACCTAAACTTCCTGGAAAGCAAGCAACTTGTCCTGAAAATAATTCCAAGTCACAAGATTCCAAGAGCGAAGAACAAAAGCCAGATATTCATTTCAGAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCCCTCATGATTAGCGATGGATGTCAATGGAGGAAATACGGTCAAAAAATGGCCAAGGGTAACCCTTGTCCACGCTCCTACTATCGCTGCACCATGTCCGTTGGATGCCCAGTTCGTAAGCAGGTGCAAAGATGTGCCGAGGACAAGACGGTGCTGATAACAACATACGAAGGGAGTCACAGCCACCCTCTCCCACCGGCCGCCACTGCCATGGCAAACACGACATCTGCAGCGGCGGCGATGCTTCTATCAGGTTCAACGACGAACAACGAAGCCTTGACAAATTCAGCCGGAGGGTACTTGTCCTCTATGCCCTACTCTTCAATGGCAACCCTATCAGCCTCTGCACCGTTTCCTACGATCACTCTGGACTTGACTCAGACCCCAAAAAGCGCGCAGCTTCACCGGATGCCGTCCACTGGCATGACGTTTCCTCTGGCATTGCAGGGTTATCCTCTGCAGCAAATAGGGAAGTCAGTGCTGTCCCCTCAGAAGCTACCGGAGGTGCCTTCTTGTATGGTGGAGACGGTGGGTGCAGCTATTGCCTCTGATCCGAACTTCACGGCAGCGCTGGCGGCAGCCATTTCGTCAATGTTTGGGAGTAATTTGAATGGCGATGGAGGGAGTGGAAATGGAATTACCATTCCTCACCTTAACGACGGGATTTCTGTGTCGCCTCAGCTTCCTCCGTCCTGCACTACATTCTCCACCAACTAG	1482	0.4946	MENQQHRRELTSTSSGFFLRQNLDPTDNHDSSHRLNIKEMDFFSSVSLGKSFETRNHHALDPHDRTINHYGSSSAPSSDRPVNTGLNLNCASHGMPRLENEEKIDAESKLIQRELRRLHEENQKLKNMLEQITKGYNQLQAHLLIALHTQKNVEANGMLSGQQALDPRQSTKLDMNNSVSDDMTQQELSVSPSSNNAELMSKQRDHHYHHQSPKLPGKQATCPENNSKSQDSKSEEQKPDIHFRKARVSVRARSEALMISDGCQWRKYGQKMAKGNPCPRSYYRCTMSVGCPVRKQVQRCAEDKTVLITTYEGSHSHPLPPAATAMANTTSAAAAMLLSGSTTNNEALTNSAGGYLSSMPYSSMATLSASAPFPTITLDLTQTPKSAQLHRMPSTGMTFPLALQGYPLQQIGKSVLSPQKLPEVPSCMVETVGAAIASDPNFTAALAAAISSMFGSNLNGDGGSGNGITIPHLNDGISVSPQLPPSCTTFSTN	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g4180	493	Coils	Coil	108	142	-	-
	Prci1g4180	493	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	99	457	IPR044810	GO:0003700
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	1	32	-	-
	Prci1g4180	493	SUPERFAMILY	WRKY DNA-binding domain	252	320	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g4180	493	ProSiteProfiles	WRKY domain profile.	254	320	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g4180	493	FunFam	probable WRKY transcription factor 31	244	321	-	-
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	8	25	-	-
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	67	83	-	-
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	162	199	-	-
	Prci1g4180	493	Gene3D	WRKY domain	244	321	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g4180	493	SMART	WRKY_cls	259	319	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	229	244	-	-
	Prci1g4180	493	Pfam	WRKY DNA -binding domain	261	318	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	61	83	-	-
	Prci1g4180	493	MobiDBLite	consensus disorder prediction	162	244	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g4180	Prci-Chr1	56674564	56677712	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g4180	2	493	WRKY Transcription Factor Family	AT4G01720	42.803	2.48e-91	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Prci1g4180		WRKY	3.1e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g4180	-		-	pcin:129287022	932.939