Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4159 ATGAATAAGATATTCCTGCCCGGGGTTGCACTCATCCTGGTCGTAGGTTGTGCTGTCGGGACTATTCTTGTCGTCCGACAAAGTGGCAGTAGTGGTAGTGGTAGCAGTGATACTGGGTTGAGCTCCCAGAACAAGGCCGTGACGGCGATATGCCAAGGCTCAGACAACAAGAAGGATTGCGAAGATACTCTTGGGACCGTCAATTCCACGGACCCAAAAGATTACATCACCACGGCAGTGGCGAAAGTGATGCAAAAGGTGATAGGTGCCGCTAACATGAGCGACAAGCTCGCCGTCGAACATGGCTCCGGCGACAAAGGCGTTAAGATGGCCATTGACGATTGCCAGGACCTGTTGCAGTCAGCCATTGATTCACTCGAGGCCTCGAACGCTATGCTCAAAGGCGATGACATTAGAACCATTGAGAATAGGACCGATGACATCAAGAATTGGTTGGCCATGGTGTTATCCTTCCAACAATCATGCTACGACGGGTTCGAGGCAGGCGGAGGCGAGAAGCAGGTAAGAGATACACTGCACACAGAAGGTGGCCTGGACGACATACAGAAGCTTACCGGAGTGGCACTCGATGTTCTCGCCGGCCTAAACCATCTGCTTTCTGCATTCAACTTGGATTTGACAGTGAAGGCTCCTTCTCGTCGTCTCCTGGAAGACGAAGATCCCAGCTGGTTGCCCCAAGCAGATCGCAAGCTCTTGGGAGCCAACCCTCCACCTCAACCCAACGCGGTGGTTGCGCAAGATGGCAGCGGTCAATATAAATCCATCACCGACGCTCTCAATTCATACCCAAAGAACCATCAAGGCAGATACATTATCTACGTCAAAGCTGGAACTTATAACGAGTACCCTCTTGTTGACAAGAAAAAGCCGAACGTTTACATCTACGGAGATGGCGCTACAAAAACCATCGTCACTGGAAACAGATGCGTCGAGCCCAAGAAGGAGTACAAGACCTTCAACAGCGCCACCTTTGCTATTGCTGGAGACATGTTCATCGCCAAGGGAATAGGATTCGAGAACACGGCTGGGTCTGTAGGACATCAAGCAGTGGCGCTGCGCACGCAAGCAGCACACGCGGCTTTTTACCAGTGCGCATTCCGAGGTTTCCAAGACACCTTGTACGTGCAGGCGGGGATTCAGTTGTTCCGCGAGTGTGAAATTACAGGCACCATCGACTTCATTTTTGGCGCGTCGAGGACTCTGATACAGAAATCAAAGATCATTTTGAGGAAGCCGATGGAGAACCAGCAGGACATAGTGGTGGCAGACGGTTCCATCAACCCTAAGGCAGGGACTGGAGTGGTGATTCAGAACAGCGATATCAACGCAGAGCCTGGGCTCGACAAGGTTGCCAATCCTTGCTATTTGGCTAGGCCATGGAAGGCGTATTCTAGGGCCATCTTCATGGAGAGCACTCTGGGTCCTATTATTCACCCGGATGGCTATCTTCCTTGGCAAGGCGATTTGTACTTGTCAACCTGTTACTTTGCTGAGTATGCCAATACTGGACCTGGCTTTAGTCCTGCCACCAGGGTCAAGTGGGGTCGAGGCCAGCTTACAAAGGATCAAGCTGCCGTCTACACTGCCACCCAATACCTTGAAGGTTTGGGTCAGCCATGGTTGGCTGCCACCGGTGTTCCTTTTGATCCTAGCTTCACCAAAGCTTAG 1689 0.5169 MNKIFLPGVALILVVGCAVGTILVVRQSGSSGSGSSDTGLSSQNKAVTAICQGSDNKKDCEDTLGTVNSTDPKDYITTAVAKVMQKVIGAANMSDKLAVEHGSGDKGVKMAIDDCQDLLQSAIDSLEASNAMLKGDDIRTIENRTDDIKNWLAMVLSFQQSCYDGFEAGGGEKQVRDTLHTEGGLDDIQKLTGVALDVLAGLNHLLSAFNLDLTVKAPSRRLLEDEDPSWLPQADRKLLGANPPPQPNAVVAQDGSGQYKSITDALNSYPKNHQGRYIIYVKAGTYNEYPLVDKKKPNVYIYGDGATKTIVTGNRCVEPKKEYKTFNSATFAIAGDMFIAKGIGFENTAGSVGHQAVALRTQAAHAAFYQCAFRGFQDTLYVQAGIQLFRECEITGTIDFIFGASRTLIQKSKIILRKPMENQQDIVVADGSINPKAGTGVVIQNSDINAEPGLDKVANPCYLARPWKAYSRAIFMESTLGPIIHPDGYLPWQGDLYLSTCYFAEYANTGPGFSPATRVKWGRGQLTKDQAAVYTATQYLEGLGQPWLAATGVPFDPSFTKA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4159 562 FunFam Pectinesterase 4 245 559 - -
Prci1g4159 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 180 IPR035513 -
Prci1g4159 562 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Prci1g4159 562 Gene3D - 244 559 IPR012334 -
Prci1g4159 562 NCBIfam pectinesterase inhibitor domain 38 175 IPR006501 GO:0004857
Prci1g4159 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 202 IPR035513 -
Prci1g4159 562 PANTHER PECTINESTERASE 18 549 - -
Prci1g4159 562 Pfam Pectinesterase 248 542 IPR000070 GO:0030599|GO:0042545
Prci1g4159 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Prci1g4159 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Prci1g4159 562 SMART PMEI_2 42 198 IPR006501 GO:0004857
Prci1g4159 562 CDD PMEI-like_3 49 202 - -
Prci1g4159 562 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4159 Prci-Chr1 56561164 56563338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4159 3 559 Carbohydrate Esterase AT5G49180 37.786 6.98e-121 366