Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4154 ATGGAAGCTAGATCTGGCCCAGAAGCTTTTCACTTTTATGGAATTGGTTCATCGGATTTGCGGGGAGTGGGGAAGAGGTCTGTTGAATGGGATTTGAACAATTGGAAATGGGATGGAGATCTTTTTATAGCTAGCCCACTGACACCAGTACCAGAAGATAGCGTAGGCCGACAATTATTCCCTCTTGGGTCTGGGATCCCCATGGCCGGAGGGTCCTCCAACAGTTCTTCCTCTTGCTCGGATGAAGTAAATCTTGGGATTGACAAGCGGAAGAAGGAAGGAGAAAGGAAAAGGAGGGTTATTGTGGTGGAAGATGACAGCTTGAATGAGGGTGCAGGTGGCCTTAGCTTAAAGCTTGGGGGCCATGACTCTCCAATTGCTGATAGGGAGATGGCAAATTGGGAAGGAATGAATGGAAAGAAAACCAGATTAGCTGGAGGTGCTTCAAATCGAGCTGTCTGTCAGGTGGAGGACTGTGGCGCGGATCTGAGCAGTGCTAAGGATTATCATAGGCGCCATAAGGTTTGTGAGATGCACTCAAAGGCCAGTAGGGCACTTGTGGGGAATGTAATGCAGCGGTTCTGTCAGCAATGTAGTCGGTTTCACATCCTTCAGGAGTTTGATGAAGGAAAGAGAAGTTGTCGAAGACGCTTGGCGGGTCACAATAAAAGGAGGAGGAAAACAAATAATGATGCTGTTCCTAATGGCAGTTCAATAAACGATGATCAGACAAGTAGTTACCTGTTGATTACATTGTTGAAGATACTTTCAAATATGCATTCTAGCAGGTCAAATCAGACCACGGATCAGGATCTGCTGTCTCATCTTCTAAAGAGCCTAGCTAGTCAAAATGGTGAACATGAAACCAAGAGCTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAAAGAAGGAAGTTCTCCTGGGAAGTCGGATATGGTTTCTGCTTTATTCTCACATGGTTCTCAAGGCTCTCCAACTGTTATAAGACAACCGCAAACAATATCTATGAGTGAAATTCAACATCAAGGGATGCATGATGCTGGGGCTGCTGATCAACAGACTGTGTCTTCTACTAAACCTAGCATTACAAACAGTCCTCCAGTTTACTCAGAAGCCAGGGACAGTGTTGCTGGACAGGTCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATAGAAGATATTGAAAGATTGCCTGTCTCTGCAAACATTGGGGCTAGTTCTCTTGATTATCAGTGGGCACAACAAGACTCTCATCAATCAAGCCCGCCTCAGACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCAAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTGAAGCTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTGTCCCACAGTCCTACTGACATTGAGAGCTACATACGGCCTGGATGTATTGTTTTGACTATTTATCTGCGTCAGACAGAGGCTGTATGGGAGGAGCTTTGCTATGATCTTACATCAAGTTTGAATAGGCTTATTGATGTCTCAGATGGTGACTTTTGGAGAACTGGATGGGTTTACACAAGAGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAGATAAATCCTTACCTTTAAGAAGTAAGAATTATGGTAAGATTGTGAGTGTTAGTCCGATTGCTGTACCAGCATTCAAAACAGCTCAATTTTCAGTCAAGGGTATGAATCTGATTCGGCCAGCCACTAGGTTATTATGTGCTCTAGAAGGGAAATATGTGGTTTGTGAAGATGCTCAGGAGCCAACGGAGCAGTGCTCCAAAGAGCTTGATGAGCTCCAGTGCATCCAATTTTCATGTTCTGTTCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAGCAGCAGCTTTTTTCCTTTCATAGTCACAGAAGAGGATGTTTGCTCAGAAATTTGTGCACTTGAGCCTCTACTAGAATCAAGCAAAGCTGATTCTGATATTGGAGGATCTGGAAAATTTATGGCCACAAGTCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTCCATAGGAGCCAATTGAAATCTAGGATGGTTCATCTAAACTCTAATGTTGATCCTTTTCCATTAAAACGGTTCAAGCAGCTCATGGAGTACTCTATGGACCATGATTGGTGTGCGGTGGTGAAGAAACTATTGAACCTTTTACTTGATGGAACGGTGGATGCAGGGGATCACCCATCTCTATATTTGGCACTTTCAGAGATGGGTCTCCTCCATAAAGCTGTAAGGAGAAATAGCAGGCAGTTGGTGGAGTTGCTTTTGAGATATGTTCCCGGGAAAATTGCTGATGAACTAGGACCTGAAAACAAGTCACTAGCTGATGTTGGGAACCAGAGCTTCTTGTTTAGACCTGACATTGTTGGCCCTGCAGGCTTGACACCACTTCATATTGCAGCTGGGAAAGATGGTTCCGAGGATGTATTGGATGCTTTAACTAATGATCCTTGCATGGTAGGAATTGAAGCATGGAAGAGTGCTCGTGACAGCACAGGATTTACGCCTGAAGATTATGCACGCTTACGTGGTCATTATGCATACATTCACTTGCTTCAGAAGAAAATCAACAAGAGACAAGCAGCAGCAGCATCTCACGTGTTGGTAGATATCCCCGGCAATCTGAATGATTCTAGCATGAATCAGAAGCAAACTGAGTCTTCCACTAGCTTGGAGATCGGAAAGGCAGAAGGAAGCCGTGTGCAAGGGCATTGCAAACTTTGCGACCATAAATTGTCTTATAGGACTGCAGTTGGAAGGTCTTTAGTGTACAAACCTGCCATGCTCTCAATGGTGGCCGTAGCAGCAGTGTGTGTCTGCGTGGCCCTTCTGTTCAAAAGCTCACCTGAAGTTCTGTACGTGTTCCAACCCTTCAGGTGGGAATCGCTGGATTTCGGAACAAGCTGA 3036 0.4437 MEARSGPEAFHFYGIGSSDLRGVGKRSVEWDLNNWKWDGDLFIASPLTPVPEDSVGRQLFPLGSGIPMAGGSSNSSSSCSDEVNLGIDKRKKEGERKRRVIVVEDDSLNEGAGGLSLKLGGHDSPIADREMANWEGMNGKKTRLAGGASNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNGSSINDDQTSSYLLITLLKILSNMHSSRSNQTTDQDLLSHLLKSLASQNGEHETKSLSNLLREPENLLKEGSSPGKSDMVSALFSHGSQGSPTVIRQPQTISMSEIQHQGMHDAGAADQQTVSSTKPSITNSPPVYSEARDSVAGQVKMNNFDLNDIYIDSDDGIEDIERLPVSANIGASSLDYQWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVLKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQTEAVWEELCYDLTSSLNRLIDVSDGDFWRTGWVYTRVQHQIAFIFNGQVVIDKSLPLRSKNYGKIVSVSPIAVPAFKTAQFSVKGMNLIRPATRLLCALEGKYVVCEDAQEPTEQCSKELDELQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVTEEDVCSEICALEPLLESSKADSDIGGSGKFMATSQAMDFIHEMGWLLHRSQLKSRMVHLNSNVDPFPLKRFKQLMEYSMDHDWCAVVKKLLNLLLDGTVDAGDHPSLYLALSEMGLLHKAVRRNSRQLVELLLRYVPGKIADELGPENKSLADVGNQSFLFRPDIVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSARDSTGFTPEDYARLRGHYAYIHLLQKKINKRQAAAASHVLVDIPGNLNDSSMNQKQTESSTSLEIGKAEGSRVQGHCKLCDHKLSYRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4154 1011 MobiDBLite consensus disorder prediction 218 239 - -
Prci1g4154 1011 MobiDBLite consensus disorder prediction 344 375 - -
Prci1g4154 1011 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Prci1g4154 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 81 878 IPR044817 GO:0003677
Prci1g4154 1011 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Prci1g4154 1011 Pfam SBP domain 154 227 IPR004333 GO:0003677
Prci1g4154 1011 Gene3D - 750 912 IPR036770 -
Prci1g4154 1011 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Prci1g4154 1011 MobiDBLite consensus disorder prediction 420 455 - -
Prci1g4154 1011 SUPERFAMILY Ankyrin repeat 777 897 IPR036770 -
Prci1g4154 1011 MobiDBLite consensus disorder prediction 349 372 - -
Prci1g4154 1011 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4154 Prci-Chr1 56503214 56510411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4154 24 1011 SBP-box Gene Family AT3G60030 57.114 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci1g4154 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4154 - - gmx:100814273 1576.99