Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4147 ATGTATGTGGCTGGTCAGCCCCACCTCCCTCCCCGAAATTTGATTCACAACATCTCTGACTTTGAAGAATCTGCGAGAAAATTCCCGAGCAAGAACAGCAAGAGGAACACGGGCCTGCCTCTGTTGGATGTACAGTATATTCCTAAAGCGAGCGGTATTCGTGAGAACGAAGAACCACCTTTCGTCTCGCCCTCACCCGGGCCTCCCGGTCCTGACAAAGTTCGTGCTTCTGATGCAGTCTCTGCCCCGTTACTGAATTCACAGCAAGATGTTATAGCTGCAAAACAAGATCCCCATGCTTCTCTTGATTCTGCTCTTGTGCAGTTTGTACCCAGCATCCGTTCAGGCAGTTATGCTGACATTGGGCCGCGGAGATACATGGAAGATGAGCATATAATGATAGACGATTTGTCTTCTCACCTGGGATCACTTTATAAGTTCCCTAAACCAAGTGCATTTTATGGGGTGTTTGATGGTCATGGAGGATCTGAAGCTGCAGTTTATGTCCGAGAAAATGTAATAAGATTTATTTTCGAGGATGCCAGCTTCCCACAATCATCTAAAGTTGATAATCTTTTCTTACAAGAATTAGAGAACTCCCTCAGGAAGGCATTCCTTTTGGCCGACTCAGCCTTGGCTGATGATCGTAGTGTGAGCAGCTCATCAGGGACCACGGCACTTACAGCTTTGATATTTGGAAGGCTTCTGATGGTGACCAATGTGGGTGATTGTCGAGCAGTTCTTTGCCGTAAAGGGGAGGCAATTGACATGTCTCAAGATCACAGGCCTATATATCCATCGGAACGGAGGCGCGTTGAAGAATCAGGTGGTTACATAGACGATGGCTATCTTAATGGGTTGTTGTCGGTTACTCGAGCTCTAGGGGACTGGGATATGAAGCTTCCACGGGGCTCTCCCACACCTCTGATTGCAGAGCCAGAGTTTCGGCGAGTGGTTCTGACAGAGGACGATGAATTCCTCATCATAGGATGTGATGGAATTTGGGATGTCATGTCCAGTCAGCATGCGGTGAGTCTTGTTAGGAGAAGCCTGAGGCGGCATGACGATCCGGAGAAGGGTGCCAGAGACCTAGTCATGGAAGCTTTGCGACTGAATGCTTTTGACAATCTCACAGTCGTTGTTGTGTGCTTCACGCCCCCTGATTACAGGGAACTATCACCCGCTCAGAGGTTGACACGTTGTAGCCTCTCTACAGAAGCACTTGGTTGCTTGAGGAGTTTGTTGGAAGGCAGTGCTAGCAACTGA 1266 0.485 MYVAGQPHLPPRNLIHNISDFEESARKFPSKNSKRNTGLPLLDVQYIPKASGIRENEEPPFVSPSPGPPGPDKVRASDAVSAPLLNSQQDVIAAKQDPHASLDSALVQFVPSIRSGSYADIGPRRYMEDEHIMIDDLSSHLGSLYKFPKPSAFYGVFDGHGGSEAAVYVRENVIRFIFEDASFPQSSKVDNLFLQELENSLRKAFLLADSALADDRSVSSSSGTTALTALIFGRLLMVTNVGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEESGGYIDDGYLNGLLSVTRALGDWDMKLPRGSPTPLIAEPEFRRVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRSLRRHDDPEKGARDLVMEALRLNAFDNLTVVVVCFTPPDYRELSPAQRLTRCSLSTEALGCLRSLLEGSASN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4147 421 SUPERFAMILY PP2C-like 109 386 IPR036457 -
Prci1g4147 421 SMART PP2C_SIG_2 129 384 IPR001932 -
Prci1g4147 421 Gene3D - 98 388 IPR036457 -
Prci1g4147 421 CDD PP2Cc 113 384 IPR001932 -
Prci1g4147 421 MobiDBLite consensus disorder prediction 53 76 - -
Prci1g4147 421 PANTHER PROTEIN PHOSPHATASE 2C 94 382 IPR015655 GO:0004722|GO:0006470
Prci1g4147 421 ProSiteProfiles PPM-type phosphatase domain profile. 114 384 IPR001932 -
Prci1g4147 421 Pfam Protein phosphatase 2C 124 376 IPR001932 -
Prci1g4147 421 SMART PP2C_4 104 382 IPR001932 -
Prci1g4147 421 FunFam Probable protein phosphatase 2C 22 98 387 - -
Prci1g4147 421 ProSitePatterns PPM-type phosphatase domain signature. 153 161 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4147 Prci-Chr1 56434058 56437085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4147 127 417 PP2C-type Phosphatase Gene Family AT3G62260 67.687 5.28e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Prci1g4147 PP2C 1.9e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4147 K14803 - qsa:O6P43_007301 546.199