Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4140 ATGGATGCCAAGATGATGCGCGAGTCTGCAGCAAATCAAAGTGAAGACGACATGTGCGTCAGGAAAGGTCCATGGACCGTTGAAGAGGACACCATTCTCGCCAACTACGTAGCCGCTCACGGTGAAGGTCAGTGGAATTTCGTCGCTCGCTGTGCAGGTTTGAATAGAACGGGCAAAAGTTGCAGATTGAGATGGCTAAACTACTTGCGTCCTGATGTTCGGCGTGGAAATATCACCCTCCAGGAACAGCTATTGATTCTCGATCTCCATTCTCGCTGGGGAAATAGGTGGTCTAAAATTGCGGAGCATTTGCCAGGAAGAACAGACAATGAGATAAAAAATTACTGGAGAACCAGAGTGATAAAGCAGGCGAAGCAGCTCAAGTGTGACGTCAACAGCAAACAGTTCAGGGATACCATGCAATATGTTTGGATTCCCCGCTTGCTGGAGCGGATTCCGGCCTCGTCCGAAGAACAACACGGGCCGGGAACAGAGTGGAGAAAACCCAATTACTCTTGCAGCCCTCTGTGTCCAGGATCGGAGCTCCAAGTCACGTCGAGTTCAGACGACAGTGAAAGAACGGGTCATCCAATAGGAAACGGGTCCGTGAGCCAGACAATAGAGCAGGGAGACTCGCTGGAGAATATATGGAGCGATGAGAATAAATGGTTTTTACAAGAACAGCTTCGCGATGAAGTGTTCTGA 705 0.495 MDAKMMRESAANQSEDDMCVRKGPWTVEEDTILANYVAAHGEGQWNFVARCAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTMQYVWIPRLLERIPASSEEQHGPGTEWRKPNYSCSPLCPGSELQVTSSSDDSERTGHPIGNGSVSQTIEQGDSLENIWSDENKWFLQEQLRDEVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4140 234 CDD SANT 24 69 IPR001005 -
Prci1g4140 234 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Prci1g4140 234 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Prci1g4140 234 FunFam MYB transcription factor 79 142 - -
Prci1g4140 234 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Prci1g4140 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci1g4140 234 SMART sant 74 122 IPR001005 -
Prci1g4140 234 SMART sant 21 71 IPR001005 -
Prci1g4140 234 MobiDBLite consensus disorder prediction 181 207 - -
Prci1g4140 234 Gene3D - 23 74 - -
Prci1g4140 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Prci1g4140 234 ProSiteProfiles Myb-like domain profile. 21 69 IPR001005 -
Prci1g4140 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Prci1g4140 234 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Prci1g4140 234 Gene3D - 79 120 - -
Prci1g4140 234 CDD SANT 79 118 IPR001005 -
Prci1g4140 234 FunFam Myb transcription factor 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4140 Prci-Chr1 56364837 56366197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4140 15 229 MYB Transcription Factor Family AT2G47190 53.012 2.87e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g4140 Myb_DNA-binding 6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4140 K09422 - qsa:O6P43_010892 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4140 1 56364837 56366197 Prci3g3587 3 45430791 45432652 CCT