Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4139 ATGTCTGGAGCCTTCCTTACTCCAAACCAAGAGAGACCGATACAAAGTGACTGTAATATGCAGCATCCCATGATGAGAAGTATATGGGATTCTTGGCCATCCGCCGCGTGTGGCAGTGAAGAAGAGACAGTAGAAATAAAGAAAGGTGCATGGACAGAGGAAGAGGATTCTATTCTGAGAAACTTCGTCACCCTTCGCGGCGAAGGCCGATGGAACTCTGTTGCTCTCTGTTCAGGTCTAAAGCGAACGGGCAAAAGCTACAGATTAAGATGGTTGAACTACTTGAGGCCAAACGTTCGACGCGGGAAAATCACCCTCCAGGAGCAGCTCTTGATCCTCGATCTCCATTTTCGCTGGGGCAATCGGTGGTCGAAAATAGCGCAACACCTGCTGTTGCAAATGAAATGTGACGTGGATAGCAAACAATTCAGAGACGCCTTGCGTTTGGTATGGATGCCTCGGCTCCTGGAGAGGATCCGGGCCTCCTCGTCCTCATCCGCACCTGGGTCTAATCACCATGTGCAAGTGCAAAGTGATCCTTGCTTCTCAGCGTTGCCTTCGTCCGAGATAAGATTTGACAGTAAAGGAAAATGTGAATAA 600 0.4917 MSGAFLTPNQERPIQSDCNMQHPMMRSIWDSWPSAACGSEEETVEIKKGAWTEEEDSILRNFVTLRGEGRWNSVALCSGLKRTGKSYRLRWLNYLRPNVRRGKITLQEQLLILDLHFRWGNRWSKIAQHLLLQMKCDVDSKQFRDALRLVWMPRLLERIRASSSSSAPGSNHHVQVQSDPCFSALPSSEIRFDSKGKCE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4139 199 Gene3D - 105 147 - -
Prci1g4139 199 ProSiteProfiles Myb-like domain profile. 96 155 IPR001005 -
Prci1g4139 199 Pfam Myb-like DNA-binding domain 101 130 IPR001005 -
Prci1g4139 199 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Prci1g4139 199 CDD SANT 50 95 IPR001005 -
Prci1g4139 199 Gene3D - 40 100 - -
Prci1g4139 199 SMART sant 100 150 IPR001005 -
Prci1g4139 199 SMART sant 47 97 IPR001005 -
Prci1g4139 199 FunFam Myb transcription factor 48 100 - -
Prci1g4139 199 SUPERFAMILY Homeodomain-like 45 130 IPR009057 -
Prci1g4139 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 99 IPR017930 -
Prci1g4139 199 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Prci1g4139 199 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 133 172 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4139 Prci-Chr1 56356982 56358001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4139 39 163 MYB Transcription Factor Family AT2G47190 55.556 3.96e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g4139 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4139 K09422 - gmx:100819467 188.734