Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4126 ATGGAGAAGGAGATGGGTTTGACGACGGAAGATGCGAAGGGATCCTCTTCATTGTCGGGTTACAACGGTTATCCATTATCGAATGCTTCTGAATTCTCTGAAGTGGAAAAGAGCTCTCTTGGGTTTATGGAGTTGCTGGGTCTCCAAGACTATAGTCCTCTGCTTCATTTGCCGTCACCGCAGCATGTGTCAACTATCGACCCCTCTGCTCTGAAAGATCTGTCTGATACGGCCAAAGAGTGTTCCGAGGTCTCCAATCAGCAACCTGCGACCCCCAACTCTTCGTCGATCTCGTCGGCGTCCAGTGGGGCCGTGACTGTCAATGACGAACACAGTAGAACTGCAGACCAAGCTGAAGAGCACTCCAAGACCAAGAAACAATTGAAAGCCAAGAAGACAAATCAGAAGAGACAGAGAGAGCCGAGATTCGCGTTCATGACGAAGAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGCGCTTCATGTAATGTGAAGAAACGAGTTGAGCGATCTTTCAGCGATCCAAGCATTGTAGTAACAACTTATGAAGGTCAACACACCCATCCAAGCCCAGTTATGCCTCGCTCGAACATCGTCGGAGTGGAAGCTTCACTTCCGGCTGGTGTCTCCGCCGGTTATTGTGCCACTTCCTTCGGTTCGCTGATGGCAGGAAACCTACTATCCCAGTATCATCACCCTCAGCAACGACAACTTCTCAATAATAATACATTATCGTCCTGGAGCTTCCCCATCAATAGCAATGCTGATTTCACTTCAAAGAACGCTGCATTAGCTTTTGCTGAGGACGGAAAATTTTGTAATTCTGGAGCCACTGCAACTTTTCTGAGAGACCACGGACTTCTTGAAGATATTGTTCCTTCACATATGTTGAAAGAAGAGTAG 972 0.4763 MEKEMGLTTEDAKGSSSLSGYNGYPLSNASEFSEVEKSSLGFMELLGLQDYSPLLHLPSPQHVSTIDPSALKDLSDTAKECSEVSNQQPATPNSSSISSASSGAVTVNDEHSRTADQAEEHSKTKKQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMPRSNIVGVEASLPAGVSAGYCATSFGSLMAGNLLSQYHHPQQRQLLNNNTLSSWSFPINSNADFTSKNAALAFAEDGKFCNSGATATFLRDHGLLEDIVPSHMLKEE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4126 323 PIRSF WRKY_txn_fact_IIc 1 323 IPR017396 GO:0003700
Prci1g4126 323 Gene3D WRKY domain 139 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4126 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 254 IPR044810 GO:0003700
Prci1g4126 323 MobiDBLite consensus disorder prediction 77 141 - -
Prci1g4126 323 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4126 323 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4126 323 MobiDBLite consensus disorder prediction 10 28 - -
Prci1g4126 323 FunFam WRKY transcription factor 57 140 214 - -
Prci1g4126 323 Coils Coil 118 138 - -
Prci1g4126 323 MobiDBLite consensus disorder prediction 80 111 - -
Prci1g4126 323 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g4126 323 MobiDBLite consensus disorder prediction 1 28 - -
Prci1g4126 323 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g4126 323 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4126 Prci-Chr1 56298160 56300362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4126 31 323 WRKY Transcription Factor Family AT2G47260 45.672 8.15e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci1g4126 WRKY 9.1e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4126 - - aprc:113872234 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4126 1 56298160 56300362 Prci3g3580 3 45359241 45360830 CCT
Prci1g4126 1 56298160 56300362 Prci1g4126 1 56298160 56300362 ECH