Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4123 ATGTCGAAGCGGAAGTTCGGGTTCGAAGGCTTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAGGATACTGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACAATGGTAATGACAGCAACAACAACGATATTGATCCCTTGGATGCTTTTATGGAAGGGATTCACGAGGAAATGAGAGCCGCGCCGCCTCCACAGCCGAAGGAAAAGGCAGAGGACAGGTATAGAGATGATGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCCTGGCGTCCGAGGCTCTGCACGCTGGATATGACTCCGATGAGGAGGTTTATGCAGCTGCGAAAGCTGTAGACGCGGGAATGGTAGAGTATGACTCTGATGACAACCCCATTCTTCTTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTGGATCACAGTTCGATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGCGAGCAAGATGTTTCTGAATACAGGAAGAGTTTGGCCATTCGTATATCAGGTTTTGATGTTCCGAGGCCAGTTAAGACATTTGAAGACTGTGGTTTCTCTCCACAACTTATGAATGCCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAATGCCAAGCTTTACCAGTTGTGCTTTCTGGCCGGGATATAATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTACATATCATGGACCAACCTGAACTTCAGAAGGATGAAGGTCCAATAGGAGTAATCTGTGCTCCCACTAGAGAACTGGCGCATCAGATATATTTGGAGGCCAAGAAATTTGCGAAACCCTATGGGTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCACTTACGATGATGAGAGCAACTTGCTTGGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTCTCTGCGACAATGCCCCGTAAAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCTTCTGATACAGAGAAATTGCCATGGCTTCTTGAGAAGCTGTCTGGAATGATTGATGAAGGTGATGTCTTAATATTTGCTTCCAAAAAGGCTGCTGTGGATGAAATTGAATCACAACTGGCACAAAGAGGCTTTAAAGCGGCAGCTCTGCATGGTGATAAAGATCAAGCTTCTCGAATGGATATCTTACAGAAGTTTAAATCTGGTGTATACCATGTTCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAATCTGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGTTTTGCTGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAGAAAAGGTAAGGGGAGGGGAGGGGGCGGTGGTAGAGGCGTGCGTGGAGTGGATTATGGCTTGGGTATTGGATACACTCCGGAGTCCAATAACCCTTCGCCTAGCACAACAAGTCGATCTGCCGCTGTAAACTCACTGCGGACAGGGATGATGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCATCAAACTCTCAAAACGAATGCTTCAGTAACAGTACAAGTATGCCTGCTAATAAGAGACCCGCCCTCCCTGGCTTCATATCTGGTGGGTCAATTGGTGGCGGTGCAAATGCTAATCATCAGACTCCTGCTTCATCCAGACCTGCTGCTCCGGCTGTAAATGCCAGCATTCACAACTCTGGAGCTGACGCTGGCCAGAGGAATACCGACAGCTCCAGGCCTAGAGAAAGGAGGAGGCCTTCAGGTTGGGACAGATAG 2307 0.4616 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNNGNDSNNNDIDPLDAFMEGIHEEMRAAPPPQPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPILLDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISGMSEQDVSEYRKSLAIRISGFDVPRPVKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKDEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATCLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKLPWLLEKLSGMIDEGDVLIFASKKAAVDEIESQLAQRGFKAAALHGDKDQASRMDILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGRGVRGVDYGLGIGYTPESNNPSPSTTSRSAAVNSLRTGMMAQFRSNFVAASSNSQNECFSNSTSMPANKRPALPGFISGGSIGGGANANHQTPASSRPAAPAVNASIHNSGADAGQRNTDSSRPRERRRPSGWDR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4123 768 MobiDBLite consensus disorder prediction 648 664 - -
Prci1g4123 768 MobiDBLite consensus disorder prediction 1 111 - -
Prci1g4123 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 434 IPR027417 -
Prci1g4123 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 377 385 IPR000629 -
Prci1g4123 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 431 IPR014001 -
Prci1g4123 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 605 IPR001650 -
Prci1g4123 768 CDD DEADc_DDX42 236 432 - -
Prci1g4123 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 225 253 IPR014014 GO:0003724
Prci1g4123 768 MobiDBLite consensus disorder prediction 13 31 - -
Prci1g4123 768 Gene3D - 187 432 IPR027417 -
Prci1g4123 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 605 - -
Prci1g4123 768 MobiDBLite consensus disorder prediction 78 111 - -
Prci1g4123 768 SMART helicmild6 484 565 IPR001650 -
Prci1g4123 768 Pfam Helicase conserved C-terminal domain 461 565 IPR001650 -
Prci1g4123 768 CDD SF2_C_DEAD 443 575 - -
Prci1g4123 768 MobiDBLite consensus disorder prediction 706 768 - -
Prci1g4123 768 Pfam DEAD/DEAH box helicase 249 420 IPR011545 GO:0003676|GO:0005524
Prci1g4123 768 FunFam probable ATP-dependent RNA helicase DDX17 187 434 - -
Prci1g4123 768 SMART ultradead3 244 446 IPR014001 -
Prci1g4123 768 MobiDBLite consensus disorder prediction 752 768 - -
Prci1g4123 768 MobiDBLite consensus disorder prediction 610 664 - -
Prci1g4123 768 Gene3D - 433 609 IPR027417 -
Prci1g4123 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 603 IPR027417 -
Prci1g4123 768 MobiDBLite consensus disorder prediction 717 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4123 Prci-Chr1 56232594 56238833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4123 225 581 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 1.77e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4123 K12835 - gmx:100814854 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4123 1 56232594 56238833 Prci1g4123 1 56232594 56238833 ECH