Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4104 ATGGAAGAAGTGGTGTTATTGGTTGATGATTTGAAATTACTTTCCGGGATTCCCCGCTGCAGAATATGTCATGAAGAAGAATTTGAGAGCTCCGAAAGTCTTGAAGCTCCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACCACTTGTGAAATATGTCTTCGGCAATATGAGCCGGGATATACAATACCTCCAAAGAAATCTCAGGCAAATGATGCGGCTATGACGATCAGAGATAGCCTGCAAATTCCAAGGGACGAAGAACCGTTAAGCGCAAGATTAGAGGGCAGTGCTGAAGAAGTCACAACAGAGGAAGATTACTCCGAGTGCACGTCTACTGCTGATAGAAGTGCATCTTGCTGCCGATCACTGGCTTTATCTTTTACACTCATTTTGCTTGTGAGACATCTTTTCGTAGTGCTTACAAGTACAAAGGAAGATTACCCATTTTCACTTCTTACGGTCTTTATACTAAAAGCAAGCGGGATCATTCTACCCATGTACATAATTATGAGGGCGATAGGAGGCATCTATGGCAGTATTCAACGTCACTACCAGTACCAGGATTCTGACGACGACACATCAATATCCGACAGTGAAGATGATGAGAGTGAAATGATGCACGATACGATCGTTCCACATCAATAA 690 0.4319 MEEVVLLVDDLKLLSGIPRCRICHEEEFESSESLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLRQYEPGYTIPPKKSQANDAAMTIRDSLQIPRDEEPLSARLEGSAEEVTTEEDYSECTSTADRSASCCRSLALSFTLILLVRHLFVVLTSTKEDYPFSLLTVFILKASGIILPMYIIMRAIGGIYGSIQRHYQYQDSDDDTSISDSEDDESEMMHDTIVPHQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4104 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Prci1g4104 229 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Prci1g4104 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Prci1g4104 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 198 IPR033275 -
Prci1g4104 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Prci1g4104 229 SUPERFAMILY RING/U-box 18 72 - -
Prci1g4104 229 Pfam Protein of unknown function (DUF3675) 73 188 IPR022143 -
Prci1g4104 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Prci1g4104 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Prci1g4104 229 MobiDBLite consensus disorder prediction 203 229 - -
Prci1g4104 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4104 Prci-Chr1 56058384 56060983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4104 20 111 C3H Transcription Factor Family AT2G37950 27.957 5.50e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4104 - - gmx:100797029 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4104 1 56058384 56060983 Prci3g3539 3 45168110 45170464 CCT
Prci1g4104 1 56058384 56060983 Prci1g4104 1 56058384 56060983 ECH