Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4089 ATGTCTGATCATAATCGCCGTGCAGCAGAAGCACCAAAACTATTCGGTTTCCCACTGACAGAACAGGAAGAATCTGGAGAAAGGAGAGATCATGAAGTGGAAGATGACAGGAAATTCAGGTGCCATTATTGCCGGAAAGCATTCACAAACTCTCAGGCATTAGGAGGTCACCAGAACGCTCACAAGAGAGAGCGGCAGCGAGCCAGGCGTTTCCACGGCCACTCCGATCACCGGCGCTTCTTCACACCCTCCAAGCATCAACCTCCACGCCTGTTCTTCCCATCCACTCCCATTTTGATTCCTTCGCCTTATACCACTTCTTCCACCACTAGGTTTCCTTTTCAACTCCAATCATCGCCTTCTCATCATGTTGCTACGCTGCCACAGAGGGATGTGGGTGTTAATGTTGACGTCCATCTGAAGTTGTCTCTCTCGGATTAG 441 0.4989 MSDHNRRAAEAPKLFGFPLTEQEESGERRDHEVEDDRKFRCHYCRKAFTNSQALGGHQNAHKRERQRARRFHGHSDHRRFFTPSKHQPPRLFFPSTPILIPSPYTTSSTTRFPFQLQSSPSHHVATLPQRDVGVNVDVHLKLSLSD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4089 146 MobiDBLite consensus disorder prediction 1 36 - -
Prci1g4089 146 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Prci1g4089 146 Gene3D Classic Zinc Finger 21 87 - -
Prci1g4089 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Prci1g4089 146 MobiDBLite consensus disorder prediction 62 76 - -
Prci1g4089 146 SUPERFAMILY beta-beta-alpha zinc fingers 35 66 IPR036236 -
Prci1g4089 146 MobiDBLite consensus disorder prediction 22 36 - -
Prci1g4089 146 MobiDBLite consensus disorder prediction 52 87 - -
Prci1g4089 146 PANTHER ZINC FINGER PROTEIN 5 8 120 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4089 Prci-Chr1 55973968 55974734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4089 13 81 C2H2 Transcription Factor Family AT5G06650 48.718 2.20e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g4089 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4089 - - pcin:129309051 309.301