Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4086 ATGGCCAAAGCCAATGCTAAGGAGAAATTCACCTCCGCCGTTCACCACCCTCCCTATTTCCATATGATCGCGGACGCCATTTCTACATTGAACGACCGCACGGGTTCCAGTCAGCAAGCAATCACCAAGTTCATCGAGGACAAACACAGTCCACTGCTGCCCCCAAATTTCAGGACCCTGCTCTCTGTTCAACTCAAGAAGTTTGTCAAATCGGAGAGGCTGTTCAAGGTGAAGAATTCCTTCAAGATCTCCTCCTCGGAGAAAACCAAGACTGCCAAACCAAGCAAGAAGGGTGCGACGCCTGCGCAGAAGGCTGCCAAGAAGATCGCAGAGAAGGGGCTGAAGACCAAGAGGCTGAGTCACGCCAAGACGCCGGAGGCTCTCAAGAAGGCCCACAGGGATGCTAAGAAGAAGTCGATGGTCTCGTCGGCTGGGAAAGACGGGAAAGTGAAGCGTCTAAGTCAGGTTAAGACTCCCGAAGCAATGAAGAAGAAGAAGACCAAAGTTACCCCTCTGAAGGGGAAGACTGCTTCCATACCCATCAAACCTTCTAGACCTGCGAAGAAGGTTAGGAAATAG 579 0.5147 MAKANAKEKFTSAVHHPPYFHMIADAISTLNDRTGSSQQAITKFIEDKHSPLLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISSSEKTKTAKPSKKGATPAQKAAKKIAEKGLKTKRLSHAKTPEALKKAHRDAKKKSMVSSAGKDGKVKRLSQVKTPEAMKKKKTKVTPLKGKTASIPIKPSRPAKKVRK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4086 192 Gene3D - 11 101 IPR036388 -
Prci1g4086 192 SUPERFAMILY "Winged helix" DNA-binding domain 14 97 IPR036390 -
Prci1g4086 192 PANTHER HISTONE H1 6 188 - -
Prci1g4086 192 MobiDBLite consensus disorder prediction 108 167 - -
Prci1g4086 192 MobiDBLite consensus disorder prediction 83 192 - -
Prci1g4086 192 CDD H15 13 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4086 192 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4086 192 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4086 192 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4086 192 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4086 192 PRINTS Histone H5 signature 142 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g4086 192 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g4086 192 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4086 Prci-Chr1 55945317 55946440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4086 17 94 Single Myb Histone (SMH) Gene Family AT1G72740 38.462 3.63e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4086 K11275 - zju:107426309 200.29