Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4082 ATGGCCAGCAGAAATCGAACTGTACTATTCAGAAAGCACAGAGATGCCGTCAAGAGCGTGCGAGCCCCTTTATCTTCCTCAGCTTCTGGTTCCGGCGGTCCCGTTATTGAAATGGTGAGCACTTCACTTCTTCGTTCGAATCAATCTTCATATGCTCCTCTAAGCACCGAAGATCCGGGCCCTTCGAGAGATGCATTTACTGTGGGGTTGCCACCAGCTTGGGTAGATGATTCTGAAGAAATAGCTACAAATATACAACGAGCTCGAGCTAAAATGTCCGAGCTAGTCAAACTTCATGCAAAGGCATTAATGCCCTCTTTTGATGATAGTAAAGAAGATCAACAACGGATTGAGATTCTCACCCAGGAGATTACTACTCTATTGAGAAAATCTGAGACGAAGCTAAAAAGACTCTCTGGTGCTAGTGGGTCCTCTGAGGATTCTAATGTCAGAAAAAATGTACAGCGCTCCCTTGCTACAGACCTTCAGAACCTTTCAATGGACCTCCGGCGAAAGCAGTCAACATACTTGAAACGGTTGCAACAGCAAAAGGAGGGATATGATGGTGTTGACTTGGAGATGAATGTGAATGGCTATAAATTTGGTTTGCAGGATGATGGATTTAGTGATGCGGGTTTCAGTGATTATCAAATGGCAAAGCTAAAGAAGAGTGAACAATTCTCGGAGGAAAGGGAAAGAGAAATAGAACAGGTCACTAAATCAGTAAACGAACTGGCCCAGATCATGAAGGATCTCTCTGTTCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAATGTTGCTACATCAGTTGAAGAGGGCTTTGAGCAGTTGGAGAAGGCTGAGAGAACGCAGAAAAAAGGAGGAATGGTTATGTGTGCAACAGTGCTTGTTATAATGTGCTTCATCATGCTAGTCCTCTTGATACTCAAGGTGATATTGTTTTAG 966 0.4337 MASRNRTVLFRKHRDAVKSVRAPLSSSASGSGGPVIEMVSTSLLRSNQSSYAPLSTEDPGPSRDAFTVGLPPAWVDDSEEIATNIQRARAKMSELVKLHAKALMPSFDDSKEDQQRIEILTQEITTLLRKSETKLKRLSGASGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSTYLKRLQQQKEGYDGVDLEMNVNGYKFGLQDDGFSDAGFSDYQMAKLKKSEQFSEEREREIEQVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFEQLEKAERTQKKGGMVMCATVLVIMCFIMLVLLILKVILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4082 321 SMART tSNARE_6 220 287 IPR000727 -
Prci1g4082 321 Gene3D - 71 279 - -
Prci1g4082 321 Pfam SNARE domain 261 313 IPR000727 -
Prci1g4082 321 SMART SynN_4 65 181 IPR006011 GO:0016020
Prci1g4082 321 FunFam Syntaxin-43 71 279 - -
Prci1g4082 321 CDD SNARE_syntaxin16 229 286 - -
Prci1g4082 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Prci1g4082 321 PANTHER SYNTAXIN 77 306 IPR045242 -
Prci1g4082 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4082 Prci-Chr1 55906207 55911540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4082 1 321 SNARE and Associated Proteins AT4G02195 69.444 3.06e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4082 K08489 - gmx:100803629 459.914