Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4074 ATGTGCGGTGGTGCTATCATCGCCGACTTCATCCCCCGCCACCGTGGGCGCCGCCTTACCGCCTCTGACATCTGGCCCAACTCTTTCGGTAAGCCAAATGATGACTCCGACTTCGACTTCCATTTTCCTCAAGCCGATCACTCCGACTCCCGCAAATCATCCCATCCTTCCCCAGCTGATCAGCAAGCCGAGAAGCCCGTTAAGAGGCAGAGGAAGAATCTCTACCGAGGGATTCGACAGCGTCCCTGGGGCAAATGGGCTGCGGAGATTCGCGACCCCAGGAAGGGGGTTCGTGTTTGGCTCGGTACCTTCAACACTGCTGAAGAAGCCGCCAGGGCCTATGACAGAGAAGCTAGGAAGATCCGCGGCAAGAAAGCCAAAGTTAATTTTCCCAATGAAGACGATGCCTACTCCCTCCCGGCTTGTCATCCACCGCCTCCGCTCCGATCCCCAATCTCTCCCCTGTATCCACAACAATACGGCTCTAACCCAAACAATGTGCCCAAGAGTTTCAATTTGGAGTTTGGCTATGATCTGAACCAGGCGGGCACAATTCCTTCCCTCGGTTTCGACACCGATCCACCCCTTGTTTCCGGAGACGAACATTCGGGATGCGGGTCGGGCTCTGGTTCCGAGGGTGCCTACTCCACGATGCAGTTGCTGGACGCAAATAAGAACGCAAACGGCTATTCTTCTCAGTGTTCAAATGTGGACGTAGAAGGAAAAGGGAACAAGGCGGTGATGGAAGCCGAAGAGAAGAACGAGATACAGAAGCTGTCGGAGGAGCTGATGGCGTACGAGAACTACATGAAGTTTTATCAGATTCCATATTATGACGGGCAATCGACGGCGTCTAATAATGTCCAGGAAAACGTGGTGGGCGATCTTTGGAGCTTTGACGACGAGGCCGTCCCCGACCCGGTGACCTCATCGGCCCCGTGA 942 0.5467 MCGGAIIADFIPRHRGRRLTASDIWPNSFGKPNDDSDFDFHFPQADHSDSRKSSHPSPADQQAEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDAYSLPACHPPPPLRSPISPLYPQQYGSNPNNVPKSFNLEFGYDLNQAGTIPSLGFDTDPPLVSGDEHSGCGSGSGSEGAYSTMQLLDANKNANGYSSQCSNVDVEGKGNKAVMEAEEKNEIQKLSEELMAYENYMKFYQIPYYDGQSTASNNVQENVVGDLWSFDDEAVPDPVTSSAP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4074 313 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Prci1g4074 313 PANTHER DNA-BINDING DOMAIN 53 231 IPR044808 GO:0003700|GO:0009873
Prci1g4074 313 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Prci1g4074 313 MobiDBLite consensus disorder prediction 35 54 - -
Prci1g4074 313 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Prci1g4074 313 Coils Coil 249 269 - -
Prci1g4074 313 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Prci1g4074 313 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Prci1g4074 313 MobiDBLite consensus disorder prediction 35 74 - -
Prci1g4074 313 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Prci1g4074 313 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Prci1g4074 313 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Prci1g4074 313 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4074 Prci-Chr1 55811278 55812593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4074 1 132 AP2-EREBP Transcription Factor Family AT3G16770 55.474 2.96e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g4074 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4074 K09286 - gmx:100780763 365.155