Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4070 ATGTATAACCTCAGCAGCAGGACAGCCCTTTCGCTCGCTCTCGTACTCATTTTCTCCCTCGCCTTTGTGCTTCACCTTTTTCCTCCCCATCACACCAGCCACCCCAAAACACACCTCCATTTCCAAAAGCACCTGCAAGTCGCCCAAACCACATGCCGAGGAACACTCTACCCACGACTCTGCGTTTCAACCCTTGCTTCCTTTCCCGATCTTGCCTCCAAATCTGTCCCCCAAATCATTTCCTCTGTCATCAATCACGCGGTGTCCGAGGTGAAATCCTCCTCCCACGACTGCAGTGGCCTCCGAAACAACCTCAGGAATCTCGAGCCGCTCGAACAGAGAGCCCTCGACGATTGTCTCCAGCTGTTTGATGACACTGTCTACGAGCTCGGCACCACTACGGCTGATCTCTCCAACGCCAAAATAGGCTTCAAGCGTTACCGTGACTTGCAGACACTGCTAAGCGGGGCAATGACTAACCTGTACACGTGTCTTGATGGATTTGCTCATAGCCGGGGGAATGTCAGAGACAGGATCCAGGACAGGTTATTCGAGACCAGGCGTCATGTTAGCAATTCATTGGCCATGCTCAAGAAAGTGCCCGGACTGAAGAAAGCTTCCGAGACCGAGATCTTCCCGGGGTATGGAAACGTGAAAAATGGGTTCCCTTCGTGGTTGTCTTCTAGAGAACGAAAGCTCCTGGAGGCAAATGTGAATGAGACGAGGTTCGATCTTGTGGTGGCGAGAGATGGCACGGGCAATTTCACCACTATTGGGGAGGCTGTGAATGCAGCTCCGAACTCCAGCATGACCAGGATTGTGATACACATAAAAGCCGGGGCGTACTTTGAGAATGTGGAGGTGATCAGGAAAAAGACCAATTTAATGTTCGTCGGGGATGGAATTGGGAAGACGGTTGTGAAAGCCAGTAGGAATGTCTTAGACGGATGGACAACTTTTCAGTCGGCCACCGTAGCTGTGGCTGGAACGGGATTCATAGCGAAGGATGTAACGTTCGAGAACTCAGCGGGAGCGAGCAAGCACCAAGCCGTGGCCCTGAGAAACAGCGCAGACCTATCCGCATTCTACAAATGCAGCTTTATCGGATATCAAGACACCCTCTACGTCCATTCCCTCAGACAGTTCTATCGAGACTGCGACGTCTACGGTACCGTCGACTTCATCTTCGGCAACGCCGCCGCTTTGTTCCAGAACTGCAACTTGTACGCACGCAGGCCTCTCCTCAACCAGAAGAACATGTTCACCGCTCAGGGCAGAGACGACCCTAACCAGAGCACCGGCATCTCCATCCTCAACTGCAAGGTCGCCGCCGCCGAGGATTTGATCCCCGTCAAGTCCTCGTTCAAGACCTACTTGGGACGCCCCTGGAAGCCCTATTCCAGGACGGTTTATCTGAAATCTTACATAGAGGATCTGATTCAGCCCGCCGGGTGGTTGGAATGGAACGGGACCCTGGGTCTGGACACGCTGTACTATAGGGAGTTCATGAACAGGGGTCCTGGCTCTGATACGCGGGCCAGAGTCGGATGGTCCGGTTTTAGGGTCATCAACTCCTCCGCCGAGGCTTCTCAGTTCACGGCCGCCCGGTTTATTCAGGGAAATGACTGGTTGAATTCCACCGCCATTCCCTTTTACCTTGACCTCAGCTGA 1671 0.5326 MYNLSSRTALSLALVLIFSLAFVLHLFPPHHTSHPKTHLHFQKHLQVAQTTCRGTLYPRLCVSTLASFPDLASKSVPQIISSVINHAVSEVKSSSHDCSGLRNNLRNLEPLEQRALDDCLQLFDDTVYELGTTTADLSNAKIGFKRYRDLQTLLSGAMTNLYTCLDGFAHSRGNVRDRIQDRLFETRRHVSNSLAMLKKVPGLKKASETEIFPGYGNVKNGFPSWLSSRERKLLEANVNETRFDLVVARDGTGNFTTIGEAVNAAPNSSMTRIVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVLDGWTTFQSATVAVAGTGFIAKDVTFENSAGASKHQAVALRNSADLSAFYKCSFIGYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAAALFQNCNLYARRPLLNQKNMFTAQGRDDPNQSTGISILNCKVAAAEDLIPVKSSFKTYLGRPWKPYSRTVYLKSYIEDLIQPAGWLEWNGTLGLDTLYYREFMNRGPGSDTRARVGWSGFRVINSSAEASQFTAARFIQGNDWLNSTAIPFYLDLS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4070 556 Pfam Plant invertase/pectin methylesterase inhibitor 49 196 IPR006501 GO:0004857
Prci1g4070 556 Gene3D - 239 555 IPR012334 -
Prci1g4070 556 NCBIfam pectinesterase inhibitor domain 15 199 IPR006501 GO:0004857
Prci1g4070 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 200 IPR035513 -
Prci1g4070 556 SUPERFAMILY Pectin lyase-like 243 553 IPR011050 -
Prci1g4070 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Prci1g4070 556 SMART PMEI_2 43 196 IPR006501 GO:0004857
Prci1g4070 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 201 IPR035513 -
Prci1g4070 556 Pfam Pectinesterase 244 541 IPR000070 GO:0030599|GO:0042545
Prci1g4070 556 CDD PMEI-like_3 50 202 - -
Prci1g4070 556 PANTHER PECTINESTERASE 18 545 - -
Prci1g4070 556 FunFam Pectinesterase 238 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4070 Prci-Chr1 55762373 55768244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4070 72 555 Carbohydrate Esterase AT4G02320 53.521 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4070 K01051 - gmx:100802881 819.69