Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4068 ATGGCAGTCAAGCTACGTTCTCTCTCAACAATGTCATTTCTTCTTCTCCTTCCCCTGCTCACCTCCTTGGCCTTTGCAGACACTTCTCCTTCGACTCCTGTCACCCCGGGAACCGCATGTAGTTCCACCCCTGACCCTTCTTACTGCAAGTCCGTTCTCCCTCCCCAGAAAGGCAATGTCTACGACTATGGCCGCTTGTCCGTCAGTAAATCCTTATCACAGTCTCTTAAATTCTTGAGCCTCGTCGATAAATATCTCCGTCGACGATCTACTCTATCCGCGGCCGCTGTTCGTGCACTCGAAGATTGCCGGACGCTCGGCGGGCTCAACTATGATTTCCTTTCCAATTCCCTTCAAACTGTGAACAAGACGACTAAGTTTCTTCCCAGCTTGCAAGCTGACGATATCCAAACCCTCCTCAGTGCTATCTTAACTAACCAGCAGACCTGCCTGGATGGCCTCAAAGACACGGCTTCAGCTTGGAGCGTCAGGAACGGACTCTCCGTCCCACTATCTAACGATACCAAGCTATACAGTATGTCACTAGCTCTGTTCACCAAAGGCTGGGTTCCCGATACCAAGACCAAAACGACTGCGTTCCAGCCTACCAGGAAACAACTTGCCTTCGGAAATGGCCGTTTGCCGCTGAAAATGTCAGGCAGAACTCTTGCCATCTACCAGTCTGTGAGTCAGAGAAAAATGCTTCAGACAGCCACCGTGGGCGGTGACGTGGTTGTTGTGAACGACATCGTGACGGTGAGGCAAGACGGGACTGGAAACTTCACCACCATCAATGACGCCATTGCTGCTGCTCCAAACAAGTCTTCCTCCACGAGCGGCTACTTCCTCATCTACGTCAGCGCAGGTGTCTACGAAGAATACGTCACCATCGATAAGAAAAAGACGTACTTGATGATGGTCGGAGACGGTATCAACAAGACCATCATTACCGGCAACCGAAGTGTCGTTGACGGGTGGACCACCTTCAACTCCGCAACTTTCGCTGTGGCAGGAAAAGGATTCGTGGGAGTGAATATGACGATTCGCAACACCGCGGGGCCGGAAAAGCACCAGGCCGTCGCAGTTCGAAACGGAGCAGATTTATCCACGTTTTACAGTTGCAGCTTCGAGGCGTATCAGGACACGTTATACGTGCATTCCCTGAGACAGTTTTACAGAGAATGCGATGTATACGGAACCGTTGATTTCATATTCGGAAACGCCGCCGTCGTGCTCCAAAACTGCAACCTGTATCCGCGTTTACCAATGAGCGGGCAATTCAATGCCATCACAGCACAGGGGCGGACCGACCCAAATCAAAACACGGGTATTTCTATCCACAACTGCAGCATCAGAGCGACCGACGATCTGGCGGCGAGCAACGGTTCGGTGAGCACTTATCTTGGGAGGCCGTGGAAGGCGTATTCGAGGACGGTTTATATGGAGAGCTTCATGGATAGCGTGATACAGAGCGCGGGTTGGCAGAAATGGGACGGTGATTTTGCATTAAGCACTCTGTATTATGCGGAGTTCAATAACAGTGGGCCTGGGTCGAGCACCGCCGACAGAGTGACGTGGCCGGGCTACCATGTTATTAACGCCACCGACGCTGCTAATTTCACGGTGTCCAACTTCTTGCTCGGAGATGACTGGCTGCCTCACACTGGAGTCGCGTACACCAGCACCTTGATCAATTGA 1698 0.5194 MAVKLRSLSTMSFLLLLPLLTSLAFADTSPSTPVTPGTACSSTPDPSYCKSVLPPQKGNVYDYGRLSVSKSLSQSLKFLSLVDKYLRRRSTLSAAAVRALEDCRTLGGLNYDFLSNSLQTVNKTTKFLPSLQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLSVPLSNDTKLYSMSLALFTKGWVPDTKTKTTAFQPTRKQLAFGNGRLPLKMSGRTLAIYQSVSQRKMLQTATVGGDVVVVNDIVTVRQDGTGNFTTINDAIAAAPNKSSSTSGYFLIYVSAGVYEEYVTIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFNSATFAVAGKGFVGVNMTIRNTAGPEKHQAVAVRNGADLSTFYSCSFEAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGISIHNCSIRATDDLAASNGSVSTYLGRPWKAYSRTVYMESFMDSVIQSAGWQKWDGDFALSTLYYAEFNNSGPGSSTADRVTWPGYHVINATDAANFTVSNFLLGDDWLPHTGVAYTSTLIN 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4068 565 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Prci1g4068 565 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Prci1g4068 565 SMART PMEI_2 31 184 IPR006501 GO:0004857
Prci1g4068 565 FunFam Pectinesterase 37 187 - -
Prci1g4068 565 NCBIfam pectinesterase inhibitor domain 9 186 IPR006501 GO:0004857
Prci1g4068 565 Gene3D - 245 563 IPR012334 -
Prci1g4068 565 SUPERFAMILY Pectin lyase-like 247 562 IPR011050 -
Prci1g4068 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Prci1g4068 565 CDD PMEI-like_3 38 189 - -
Prci1g4068 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Prci1g4068 565 PANTHER PECTINESTERASE 26 553 - -
Prci1g4068 565 FunFam Pectinesterase 245 563 - -
Prci1g4068 565 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4068 Prci-Chr1 55741929 55744003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4068 8 564 Carbohydrate Esterase AT4G02330 62.718 0.0 726