Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g4066 | ATGGATACGGACGCTCACAATAATAAATATGCCCATAACGGTAAGCTCCTGCTCTGCTCTGCTACTCTTCTCTTCTCCATGATTATCCTCATCATCTTCCTCCACACCTACTCTCCCTCCTGCTTCCGCCGCCGCCGCCGCCGCCCACAACGCCGCGGTCGCCAGACTCAGCTACTCCTCCCGACTGCCACCGCCCACCCTCAAACGGCCCTCGACCCTTCTCTTTTCAAGTTCCTTCCCACCTTCATCTACTCCAACAACACCCACCCCCACCTCCAGGAATGTGCCGTCTGCTTGTCGGAGTTCCAAGAAGACGAGGACGGTCGCCTCCTCCCTAACTGCAACCACTGTTTTCATACCTATTGCATTGATACATGGTTCCGCTCTCATTCCAACTGCCCAATATGCCGAGCACTGGTTCAGCCTTCAACAATCTCGCCCCAAAGAACAGAGGCGGCTGTGTCCGAAGGAGAGTTCGCTGGCTGCTCGTATCTTCCTCCTCCGATTTCGTGCCCGAGGATGGAGTTCGATTTAGATGTGCTGGGCGTAATAGTGGAGGCGAGTAAGGAAGAGTTGGGTCAGAACAGGAGGAGTTCGGAATCGGGTTCACCAGGAGAGACCCGATTGAAAAGTTCCGATGATGGACGATGGAAGGGTATTTGA | 663 | 0.5445 | MDTDAHNNKYAHNGKLLLCSATLLFSMIILIIFLHTYSPSCFRRRRRRPQRRGRQTQLLLPTATAHPQTALDPSLFKFLPTFIYSNNTHPHLQECAVCLSEFQEDEDGRLLPNCNHCFHTYCIDTWFRSHSNCPICRALVQPSTISPQRTEAAVSEGEFAGCSYLPPPISCPRMEFDLDVLGVIVEASKEELGQNRRSSESGSPGETRLKSSDDGRWKGI | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g4066 | 220 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
| Prci1g4066 | 220 | CDD | RING-H2_EL5-like | 94 | 137 | - | - | |
| Prci1g4066 | 220 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
| Prci1g4066 | 220 | MobiDBLite | consensus disorder prediction | 191 | 220 | - | - | |
| Prci1g4066 | 220 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 6 | 141 | IPR044675 | - | |
| Prci1g4066 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 143 | IPR013083 | - | |
| Prci1g4066 | 220 | SUPERFAMILY | RING/U-box | 81 | 143 | - | - | |
| Prci1g4066 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g4066 | Prci-Chr1 | 55736508 | 55737686 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g4066 | 7 | 141 | Rapid Response to Elicitors | AT3G16720 | 46.622 | 3.33e-35 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g4066 | - | - | pcin:129292303 | 446.432 |