Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4042 ATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGGAATTTGCCGGGCGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCTCCCAGACCCCCGGGATATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCTATTCGTGGCCGTGATGGCTATGATTTTGATGGACATCGGTTACGGGTAGAACCTGCACATGGTGGACGTGGTCATTCATCGTCCCGAGACCGATACAGTAGTCACAGTAATGGTCGAAGTGGACGTGGTGTTTCTAGGCGCTCTGAGTACCGTGTTCTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTCAAAGATCACATGCGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACAACTGGGATCGTTGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAGAGCTTTTGTCCGGGTGAGGGAATATGATTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGTGGCCGATCTTATTCTAGGGGGCGAAGTTATAGCCGCAGTCGTAGCCGCAGTTACAGTCGAGGGCATAGTCAGAGCAAATCTCCAAAGGGCAAATCTTCGCAGCGTTCACCTGCTAGATCTCCTTCAAGATCTGTTTCGCGATCACGTTCTCACTCAAAGTCAAGGTCCAGATCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATGTCCATGGGTGCTAGATTGGGAATCAAGGAGATCATGGATTGCTATTTTAGAGAAGGATGTCTTGTGTGCTAA 942 0.4639 MSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRSGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAFVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGHSQSKSPKGKSSQRSPARSPSRSVSRSRSHSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEMSMGARLGIKEIMDCYFREGCLVC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4042 313 Gene3D - 2 109 IPR012677 -
Prci1g4042 313 MobiDBLite consensus disorder prediction 215 244 - -
Prci1g4042 313 CDD RRM1_SF2_plant_like 8 78 - -
Prci1g4042 313 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Prci1g4042 313 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Prci1g4042 313 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 256 - -
Prci1g4042 313 CDD RRM2_SF2_plant_like 111 186 - -
Prci1g4042 313 MobiDBLite consensus disorder prediction 188 258 - -
Prci1g4042 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Prci1g4042 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Prci1g4042 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Prci1g4042 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Prci1g4042 313 SMART rrm1_1 8 78 IPR000504 GO:0003723
Prci1g4042 313 SMART rrm1_1 112 181 IPR000504 GO:0003723
Prci1g4042 313 MobiDBLite consensus disorder prediction 73 108 - -
Prci1g4042 313 Gene3D - 110 188 IPR012677 -
Prci1g4042 313 MobiDBLite consensus disorder prediction 73 107 - -
Prci1g4042 313 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4042 Prci-Chr1 55567514 55573041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4042 8 195 Eukaryotic Initiation Factors Gene Family AT4G34110 26.396 5.19e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4042 K12890 - cave:132168829 367.466