Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4034 ATGAAGTTCTGCAAGACGTACCAGGAGTACATGCAAGGGCAGGAGAAGAAACATCCCGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAATGCAGAGTAGACTATCAACCCCAGGATCAGGTTGCCTTCATTGACGAAGCCACCGCCCACACCGTCCGGACATGCCCTGATCATTGCCCTGTGTGCGATGGGACATTCTTCCCTTCACTTCTCAATGAAATGTCGGAAATAGTAGGCTGCTTTAATCAGCGAGCGCAGAAATTATTAGAGCTACATCTCGCTTCTGGCTTTAGAAAGTACTTGTTTTGGATCAAAGGAAAACGGCGAGGAAACCACACTACTCTCATTCAAGAAGGCAGAGATCTGGTTACCTATGCACTGATCAATGCTGTTGCTATTCGAAAAATACTCAAGAAATATGACAAGGTTCATTATTCAAAGCAAGGGCAACTGTTCAAGTCTCAAGTCCAGAGTATGCATATGGAAATTCTTCAGAGTCCTTGGTTTTGTGAGTTGATGGCCTTGCACATCAATTTAAGGGAAACCAAGTCCAAGTCCAGGCATGCAGCCGTGTTGTTTAATGGATGTTCTCTCGCATTCAAGGATGGAAAACCATCAATTACTTGTGAGCTCTTTGATTCCATCAAACTTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTATTTGATCCTGTTTCTCTTACTTGTGGCCATCTATTCTGCTATATGTGTGCTTGCTCAGCTGCATCAGTCACTATTGTTGATGGTCTCAAGGAAGCAAATCCTAAAGCAAAATGTCCTCTCTGCCGAGAGAGTGGAGTTTATGAAGGTGCTGTCCACTTGGAAGAATTGAACATTCTGTTAGGTCGAAGGTGTCCAGAGTACTGGGAAGAAAGACTCCAGACGGAGAGAGCAGAGAGGCTTAAGCAAATAAAGGAGCATTGGGAATCAGAGTGCAGGGCTGTATTGGGCGTCTGA 990 0.4444 MKFCKTYQEYMQGQEKKHPGVGFKKLKKILKKCRVDYQPQDQVAFIDEATAHTVRTCPDHCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLLELHLASGFRKYLFWIKGKRRGNHTTLIQEGRDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQVQSMHMEILQSPWFCELMALHINLRETKSKSRHAAVLFNGCSLAFKDGKPSITCELFDSIKLDIDLTCSICLDTVFDPVSLTCGHLFCYMCACSAASVTIVDGLKEANPKAKCPLCRESGVYEGAVHLEELNILLGRRCPEYWEERLQTERAERLKQIKEHWESECRAVLGV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4034 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 327 IPR013083 -
Prci1g4034 329 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Prci1g4034 329 CDD RING-HC_BAH1-like 215 288 - -
Prci1g4034 329 Pfam Zinc finger, C3HC4 type (RING finger) 222 275 - -
Prci1g4034 329 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Prci1g4034 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 IPR033326 -
Prci1g4034 329 SUPERFAMILY RING/U-box 218 277 - -
Prci1g4034 329 SMART ring_2 225 273 IPR001841 -
Prci1g4034 329 CDD SPX_BAH1-like 2 152 - -
Prci1g4034 329 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4034 Prci-Chr1 55538864 55541640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4034 222 274 C3H Transcription Factor Family AT4G28270 43.103 2.54e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4034 K16275 - gmx:100787904 553.903