Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4008 ATGGGCAAAAACATGGAGTTTCAGGACGCTGTGAGTTTCGTGGTCCACGGATCCATACAGAAGAATCGGGTTTCTCACAAGGCAACAGAACCAGAGAAATTTAACGACGCCGTCACCCCCGGCCGGAAATGGAAGATCTTCTACAGGTCGTCGTCGACCTTCCCTTCCAAGCATTCAAAACATGAAAAGAAACAGGCCCCGGAGGAATTTCTCTGTCCTATCTCGGGGTCTCTTATGGCAGACCCCGTCATCATCTCCTCTGGCCATACTTTCGAACGAGTCTCTGTTCAAGCTTGTAAAAATTTAAATTTCACACCACTGCTCTCCGATGGCTCCACTCCTGATTTTTCTACTGTAATTCCCAACCTTGCCCTCAAATCTGCCATTGCTAAATGGTGTCAGGACTCCGCCAACCTCCCTCCCGAGCCGCCTGATGTCTCTTCTTCTGAGAGGTTCGTGCATGGACTAATGATGAAGACCCGGAAGACAGATTCAAGTGTCCAGAACAAAATAGAGGCGCAGAAGGCAGTAATCACAGAGGAAGAGCTGATTCAAGGAATGAAGGACCCAAGAGTGAACTTTAATCACGCTGCGACTGAGGTCACTCGACGGCCAGCACACCCGTACTGGAACTCAGAGGAATCGGCGGCTTCCTCTCCTGCATCTCCGCCAATGCAACTTTCAAGTCGACCGAGCTGCTACTCCTCTGCTTCATCCTCAGAAATCGAAATCATAATTCCTAGCTCACACGAAGAAGAGGAAACCTTGGCGAAGTTGAAGAGCTCGCAAGTGTCCGAGATCGAAGAAGCCATTATTTCACTCAGAAAGCTCACGAAAACCAGAGAGGATACGAGGGCCTATCTCTGCAGTCCTCGTTTACTCTCCGTCCTTCGATCCTTAATCGTGTCCAAGCACACTAATATTCAGGTGAACGCGGTGGCAGCTCTGGTGAACCTCTCACTGGAGAAAGTGAACAAAGTAAAGATACTCCGGTCCGGAATCGTTCCTCCATTGATTGACGTATTGAAGGGCGGATCCCCCGAGGTGCAGGAACACGCTTCCGGTGCACTCTTCAGCCTGGCCATTCACGACGATAACAAGACTGCAATCGGCGTGCTGGGCGCTCTGCCGCCGCTGCTCCACTTGCTTCAATCCGAGAACGAGCGAACGCGGAATGACTCGGCGCTCGCGCTCTACCACCTTTCCCTCGTACAGAGCAACCGGACCAAGATGGTAAAAATCGGGTCGGTGCCGATCCTGATGAGCATGTTAAAGTCGGGTAAAATGAGGGGTCACGTGCTGCTCATACTATGCAACTTAGCGTCTTGCGGGGATGGGCGGGCGGCAATGTTGGATGCGCAGGCGGTGGAGTGCTTGGCGGGGTTGTTGAGCAGTGGCGACTTGGGTTCCGGGTCGACCCGGGAGAGCTGCGTGGCGGTGTTGTATGCATTGAGTCAGGGCGGATTGAGGTTTAAAGCGGTGGGGACGGCGGCGGGGGTCGTGGAGGTGTTGAAGAAGGTGGAGAAGGTGGGAACCGAGAGGGCTAGAGAGAAGGTGAAAAGGATATTGGAGACAATGAGAGTGCAGGAGGAAGCCGAAGAGGACGATGTCGACTGGGAGGCGCTTCTTGACTCGGGGTTGAGTAGTCTGAGTCGGACCCGTTGCTTGTCGGGCGAGTGA 1680 0.5315 MGKNMEFQDAVSFVVHGSIQKNRVSHKATEPEKFNDAVTPGRKWKIFYRSSSTFPSKHSKHEKKQAPEEFLCPISGSLMADPVIISSGHTFERVSVQACKNLNFTPLLSDGSTPDFSTVIPNLALKSAIAKWCQDSANLPPEPPDVSSSERFVHGLMMKTRKTDSSVQNKIEAQKAVITEEELIQGMKDPRVNFNHAATEVTRRPAHPYWNSEESAASSPASPPMQLSSRPSCYSSASSSEIEIIIPSSHEEEETLAKLKSSQVSEIEEAIISLRKLTKTREDTRAYLCSPRLLSVLRSLIVSKHTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDVLKGGSPEVQEHASGALFSLAIHDDNKTAIGVLGALPPLLHLLQSENERTRNDSALALYHLSLVQSNRTKMVKIGSVPILMSMLKSGKMRGHVLLILCNLASCGDGRAAMLDAQAVECLAGLLSSGDLGSGSTRESCVAVLYALSQGGLRFKAVGTAAGVVEVLKKVEKVGTERAREKVKRILETMRVQEEAEEDDVDWEALLDSGLSSLSRTRCLSGE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4008 559 PANTHER U BOX DOMAIN-CONTAINING 58 526 - -
Prci1g4008 559 Pfam Kinesin-associated protein (KAP) 301 450 - -
Prci1g4008 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Prci1g4008 559 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Prci1g4008 559 SMART arm_5 363 403 IPR000225 GO:0005515
Prci1g4008 559 SMART arm_5 322 362 IPR000225 GO:0005515
Prci1g4008 559 SMART arm_5 281 321 IPR000225 GO:0005515
Prci1g4008 559 SMART arm_5 443 486 IPR000225 GO:0005515
Prci1g4008 559 SMART arm_5 404 442 IPR000225 GO:0005515
Prci1g4008 559 FunFam RING-type E3 ubiquitin transferase 47 138 - -
Prci1g4008 559 MobiDBLite consensus disorder prediction 205 234 - -
Prci1g4008 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 370 IPR000225 GO:0005515
Prci1g4008 559 SUPERFAMILY RING/U-box 57 141 - -
Prci1g4008 559 Gene3D - 250 528 IPR011989 -
Prci1g4008 559 SUPERFAMILY ARM repeat 256 523 IPR016024 -
Prci1g4008 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 140 IPR013083 -
Prci1g4008 559 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Prci1g4008 559 MobiDBLite consensus disorder prediction 212 234 - -
Prci1g4008 559 FunFam RING-type E3 ubiquitin transferase 250 526 - -
Prci1g4008 559 Pfam U-box domain 66 135 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4008 Prci-Chr1 55383136 55385223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4008 63 559 U-box Gene Family AT5G40140 55.248 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4008 - - qsa:O6P43_004571 632.098