Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3987 ATGAAGAGCATGTTTAATGGGTCTCCTCCCTTTATGATCTGTGGGATGTCGGAGAGCATTTATCATAAGTGGTTTTTTAACCATAACCATTTGAAGATTTCTTGGATTCATAAACGAATCCTGCAAAAAGATGGTTACTCGAGCTACCCAGCTCCTGTTTTGCCTTCATCTTCGCCCCCATATCCCGGTGCTTTCCACAAAGAAACAGGATCTTCTTCCTCGTCTGGTACTAGAATTAGTCCTGCTGTTCTTTTCATTATAGTGATTCTAGCCGTGCTCTTTTTCATTTCTGGTCTTCTACACCTGCTCGTTAGATTTCTCGTAAAGCACCCATCTTCCTCAGCATCTGAATCTAGTAGACACCAAGAAATCTCAACCTCCGATGCTCTTCAAAGACAACTCCAACAGCTCTTCAATCTTCATGACTCTGGTCTGGATCAAGCATTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGTCTGAAAGAACCATTTGACTGTGCCGTGTGCCTGTGTGAGTTTTCTGAGAAGGACAAGCTCAGATTGCTTCCCATGTGCAGCCATGCCTTTCATATCAATTGTATAGACACATGGCTTCTGTCCAATTCCACATGTCCACTTTGTAGAGGAACACTTTTAACTCCTGGTTTTTCAATTGAAAACCCAATATATGATTTTGATGATTTAAGGGAACAGGATGGATGTAACGGGGAAAATGGGTTCACAACGTTTAGACAGAAGACTGTTGAAATTGAAGAAACTGTAGAGAAAGGGGTGTTCCCAGTAAAACTTGGTAAATTCAGAAGGCTGAATATGCAGGAGGCAGGGGAGACTGGAGGAGGAGAGACGAGTAGCAGTAATTTAGATGCAAGAAGATGCTACTCAATGGGATCTTACCAGTATGTTCTTGGCAATTCGGACCTCCGAATTGCCTTAAACGAGGAGCGACAAGGCCGCGAGGCAAGGCTCACAAAAGGACCAGAACAATCTGAGAAGCTTTCCATGGAGGAGGCAAAGAAGATTAGAAGTGTGAGCAAAGGTGAGAGCTATTCTGTTTCCAAGGTCTGGCAGTGGTCCAAGAAGAGCAGGTTCTCTTCTTCATCCGAAGAAGATCAAGTGGGCATGCCATCTTCTCTTAATGCAGACCTGCCATGGATGAGGAATACAGAAGGGACATGA 1188 0.4369 MKSMFNGSPPFMICGMSESIYHKWFFNHNHLKISWIHKRILQKDGYSSYPAPVLPSSSPPYPGAFHKETGSSSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLVKHPSSSASESSRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTPGFSIENPIYDFDDLREQDGCNGENGFTTFRQKTVEIEETVEKGVFPVKLGKFRRLNMQEAGETGGGETSSSNLDARRCYSMGSYQYVLGNSDLRIALNEERQGREARLTKGPEQSEKLSMEEAKKIRSVSKGESYSVSKVWQWSKKSRFSSSSEEDQVGMPSSLNADLPWMRNTEGT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3987 395 MobiDBLite consensus disorder prediction 320 347 - -
Prci1g3987 395 MobiDBLite consensus disorder prediction 320 395 - -
Prci1g3987 395 Pfam Ring finger domain 169 212 IPR001841 -
Prci1g3987 395 CDD RING-H2_EL5-like 169 212 - -
Prci1g3987 395 SMART ring_2 170 211 IPR001841 -
Prci1g3987 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 74 359 - -
Prci1g3987 395 FunFam RING-H2 finger protein ATL46 132 217 - -
Prci1g3987 395 MobiDBLite consensus disorder prediction 349 378 - -
Prci1g3987 395 SUPERFAMILY RING/U-box 149 218 - -
Prci1g3987 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 217 IPR013083 -
Prci1g3987 395 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3987 Prci-Chr1 55257983 55260417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3987 67 374 C3H Transcription Factor Family AT2G18650 40.896 4.25e-63 206