Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3979 ATGGCTGCTCGCATTCTGCGTTCTATCGCTTCCTCTTGTTCTGCCTCTGCTTCCAGACGTTGTTTGGGTTTACATCGTTGTTGGGCCAGAGGTATCAGCAGGACTTACGAATCAGCTGCTGCCGAGGAGCCTATTACCCCACCTGTTCAAGTAGATCACACTCAGCTTCTCATTGATGGACAATTCGTTGATGCTGCTTCCGGAAAAACTTTCCCAACCTTCGATCCTAGGACAGGAGATACGATTGCAAATGTTGCTGAAGGTGACAGTGAAGATGTGGATCGTGCTGTCTCTGCTGCCAGGAGGGCATTTGATGAGGGACCATGGCCAAGGATGACTGCTTATGAAAGATCATGCATAATTCTGCGTTTTGCTGACTTGCTGGAAAAGCACAATGACGAAGTAGCAACACTTGAAACATGGAATAGCGGAAAGCCTTATGAACAGGCTGCAAATGTTGAAGTACCTATGGTGACACGTATATTTCGATATTATGCTGGTTGGGCAGATAAAATTCACGGTCTCACAGTCCCATCTGATGGACCCCACCATGTCCAAACCTTGCATGAGCCGATTGGGGTGGCAGGCCAAATTATTCCTTGGAATTTCCCTCTTCTTATATATTCATGGAAGGTTGGGCCTGCTTTAGCTTGTGGTAATACAGTTGTTCTCAAAACTGCAGAGCAGACACCTCTCTCTGCCCTTTTTGTCTCAAAGCTATTTCATGAGGCTGGCCTTCCTCCTGGTGTTCTAAATATTATCTCTGGCTATGGGCCCACTGCTGGTGCAGCTCTATGTAGTCACATGGGTGTTGACAAGCTTGCTTTCACAGGATCCAGTGGCACCGGGAAGATTGTATTGGGACTGTCTGCACAAAGTAATCTGAAGCCAGTGACCCTGGAGCTGGGTGGAAAGTCTCCCTTCATTGTGTGCAAGGATGCTAATGTTGATGAGGCTGTTGAGAGTGCACATGCTGCTTTATTCTTCAATCAGGGTCAATGTTGTTGTGCCGGTTCTCGTACATTTGTACACGAAAGCATTTATGATGAGTTTGTAGAAAAAGCAAAAGCCCGTGCCCTCAAACGTATTGTTGGAGATCCCTTTAAAAGTGGGGTTGAGCAAGGTCCACAGATTGATTCAACACAATTCGAGAAGATCCTCAAGTACATAAAATCAGGCATTGACAGTGGAGCTACTCTTGAATCTGGCGGTCAAAGAATTGGCTCAAAAGGTTACTATATCCAACCTACTGTTTTCTCAGATGTCCAGGATAACATGTTGATAGCAAAAGATGAGATTTTCGGACCAGTGCAGACTATATTGAAATTCAAGGATCTTGAGGAGGTGATAAGAAGAGCAAATGCAACATCCTATGGGCTGGCCGCTGGAGTTTTTACTCAGAATTTGGACACTGCCAACACTTTGATGCGCGCATTGCGAGTTGGAACAGTATGGATAAACTGCTACGATGTATTTGATGCAGCAATACCTTTTGGTGGGTATAAGATGAGTGGTCAAGGCAGAGTAAGGGGAATCTATAGCCTTAGCAACTACCTGCAAATCAAGGCTGCTGTTACTTCTTTGAAAAATCCAGCTTGGTTGTAG 1605 0.4542 MAARILRSIASSCSASASRRCLGLHRCWARGISRTYESAAAEEPITPPVQVDHTQLLIDGQFVDAASGKTFPTFDPRTGDTIANVAEGDSEDVDRAVSAARRAFDEGPWPRMTAYERSCIILRFADLLEKHNDEVATLETWNSGKPYEQAANVEVPMVTRIFRYYAGWADKIHGLTVPSDGPHHVQTLHEPIGVAGQIIPWNFPLLIYSWKVGPALACGNTVVLKTAEQTPLSALFVSKLFHEAGLPPGVLNIISGYGPTAGAALCSHMGVDKLAFTGSSGTGKIVLGLSAQSNLKPVTLELGGKSPFIVCKDANVDEAVESAHAALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRIVGDPFKSGVEQGPQIDSTQFEKILKYIKSGIDSGATLESGGQRIGSKGYYIQPTVFSDVQDNMLIAKDEIFGPVQTILKFKDLEEVIRRANATSYGLAAGVFTQNLDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLSNYLQIKAAVTSLKNPAWL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3979 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Prci1g3979 534 Pfam Aldehyde dehydrogenase family 62 523 IPR015590 GO:0016491
Prci1g3979 534 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 58 327 - -
Prci1g3979 534 FunFam Mitochondrial aldehyde dehydrogenase 2 306 495 - -
Prci1g3979 534 CDD ALDH_F2BC 51 526 - -
Prci1g3979 534 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 38 523 - -
Prci1g3979 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 300 307 IPR029510 GO:0016491
Prci1g3979 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 58 522 IPR016162 GO:0016491
Prci1g3979 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 493 IPR016163 GO:0016620
Prci1g3979 534 SUPERFAMILY ALDH-like 51 527 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3979 Prci-Chr1 55203070 55206798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3979 1 534 Aldehyde Dehydrogenase Gene Family AT3G48000 73.098 0.0 842